PDB Entry (2bmg)

Download

Visualizer: MichelaNGLo

PDB ID: 2bmg Resolution: 2.7 Å Exp. Method: X-RAY DIFFRACTION
PMID: 15857135 DOI: 10.1021/jm049187l
Protein
Protein Name: Coagulation factor X
Protein Class: HYDROLASE
Uniprot ID/ACC: P00742 (FA10_HUMAN) Organism: Homo sapiens
Gene Symbol: F10 Gene ID: 2159
Pocket Descriptors
Volume: 695.296 Depth: 24.377
Hydrophobicity: 0.649485 Drug Score: 0.35948
Pocket Similarity: Calculate
Ligand
Ligand Name:   3-[2-(2,4-DICHLOROPHENYL)ETHOXY]-4-METHOXY-N-[(1-PYRIDIN-4-YLPIPERIDIN-4-YL)METHYL]BENZAMIDE
HET ID:   I1H PubChem:   6420136
DrugBank:   - ChEMBL:   CHEMBL96434
Canonical SMILES:   COc1ccc(cc1OCCc1ccc(cc1Cl)Cl)C(=O)NCC1CCN(CC1)c1ccncc1
Standard InChI:   InChI=1S/C27H29Cl2N3O3/c1-34-25-5-3-21(16-26(25)35-15-10-20-2-4-22(28)17-24(20)29)27(33)31-18-19-8-13-32(14-9-19)23-6-11-30-12-7-23/h2-7,11-12,16-17,19H,8-10,13-15,18H2,1H3,(H,31,33)
Molecular Formula:   C27H29Cl2N3O3 Mol. Weight:   514.4435 Heavy Atoms:   35
Charge:   0 Is Chiral:   False logP:   6.1208
HBD:   1 HBA:   6 TPSA:   63.69
#Bonds:   38 #Rotatable Bonds:   10 Shape Complexity:   0.33333334
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Ki : 18 nM
BindingDB Ki : 18 nM