PDB Entry (6h11) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6h11 | Resolution: 1.52 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: None | |
Protein |
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Protein Name: Lysine-specific demethylase 4D | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q6B0I6 (KDM4D_HUMAN) | Organism: Homo sapiens |
Gene Symbol: KDM4D | Gene ID: 55693 |
Pocket Descriptors | |
Volume: 1583.62 | Depth: 31.6127 |
Hydrophobicity: 0.659401 | Drug Score: 0.91161 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: [[(2~{R})-2-[(4-bromophenyl)carbonylamino]-2-(2~{H}-1,2,3,4-tetrazol-5-yl)ethanoyl]amino]azanium | ||
HET ID: FHT | PubChem: 145864183 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: [NH3+]NC(=O)[C@@H](c1n[nH]nn1)NC(=O)c1ccc(cc1)Br | ||
Standard InChI: InChI=1S/C10H10BrN7O2/c11-6-3-1-5(2-4-6)9(19)13-7(10(20)14-12)8-15-17-18-16-8/h1-4,7H,12H2,(H,13,19)(H,14,20)(H,15,16,17,18)/p+1/t7-/m1/s1 | ||
Molecular Formula: C10H11BrN7O2+ | Mol. Weight: 341.14404 | Heavy Atoms: 20 |
Charge: 1 | Is Chiral: True | logP: -0.5118 |
HBD: 4 | HBA: 7 | TPSA: 140.3 |
#Bonds: 26 | #Rotatable Bonds: 6 | Shape Complexity: 0.1 |
Stereocomplexity: 0.1 | Ligand Type: Small Molecule |
Binding Affinity |
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