PDB Entry (5osx)

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Visualizer: MichelaNGLo

PDB ID: 5osx Resolution: 1.92 Å Exp. Method: X-RAY DIFFRACTION
PMID: 29676910 DOI: 10.1021/jacs.8b02597
Protein
Protein Name: Eukaryotic translation initiation factor 4E
Protein Class: TRANSLATION REGULATOR
Uniprot ID/ACC: P63073 (IF4E_MOUSE) Organism: Mus musculus
Gene Symbol: Eif4e Gene ID: 13684
Pocket Descriptors
Volume: 303.68 Depth: 21.2995
Hydrophobicity: 0.741379 Drug Score: 0.0378265
Pocket Similarity: Calculate
Ligand
Ligand Name:   [(2~{S},3~{S},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-3~{H}-purin-7-ium-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl-[[[(3~{R},4~{S})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-phosphinic acid
HET ID:   AKW PubChem:   138753127
DrugBank:   - ChEMBL:   -
Canonical SMILES:   CN1C=[N+](C2=C1C(=O)NC(=N2)N)C3C(C(C(O3)CSP(=O)(O)OP(=O)(O)OP(=O)(O)SCC4C(C(C(O4)N5C=NC6=C5N=C(NC6=O)N)O)O)O)O
Standard InChI:   InChI=1S/C21H29N10O16P3S2/c1-29-5-31(15-9(29)17(37)28-21(23)26-15)19-13(35)11(33)7(45-19)3-52-50(42,43)47-48(38,39)46-49(40,41)51-2-6-10(32)12(34)18(44-6)30-4-24-8-14(30)25-20(22)27-16(8)36/h4-7,10-13,18-19,32-35H,2-3H2,1H3,(H8-,22,23,25,26,27,28,36,37,38,39,40,41,42,43)/p+1
Molecular Formula:   C21H30N10O16P3S2+ Mol. Weight:   835.5716 Heavy Atoms:   52
Charge:   1 Is Chiral:   True logP:   -1.9517
HBD:   11 HBA:   25 TPSA:   479.94
#Bonds:   57 #Rotatable Bonds:   12 Shape Complexity:   0.52380955
Stereocomplexity:   0.52380955 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD IC50 : 285 nM