PDB Entry (5fzh) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 5fzh | Resolution: 2.09 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: None | |
Protein |
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Protein Name: Lysine-specific demethylase 5B | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q9UGL1 (KDM5B_HUMAN) | Organism: Homo sapiens |
Gene Symbol: KDM5B | Gene ID: 10765 |
Pocket Descriptors | |
Volume: 1871.36 | Depth: 28.0739 |
Hydrophobicity: 0.678392 | Drug Score: 0.968733 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: (3R)-5-fluoro-3-hydroxy-1,3-dihydro-2H-indol-2-one | ||
HET ID: 0TI | PubChem: 6926189 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: O=C1Nc2c([C@H]1O)cc(cc2)F | ||
Standard InChI: InChI=1S/C8H6FNO2/c9-4-1-2-6-5(3-4)7(11)8(12)10-6/h1-3,7,11H,(H,10,12)/t7-/m1/s1 | ||
Molecular Formula: C8H6FNO2 | Mol. Weight: 167.13715 | Heavy Atoms: 12 |
Charge: 0 | Is Chiral: True | logP: 0.9492 |
HBD: 2 | HBA: 3 | TPSA: 49.33 |
#Bonds: 14 | #Rotatable Bonds: 0 | Shape Complexity: 0.125 |
Stereocomplexity: 0.125 | Ligand Type: Small Molecule |
Binding Affinity |
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