PDB Entry (6h0x)

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Visualizer: MichelaNGLo

PDB ID: 6h0x Resolution: 1.64 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: Lysine-specific demethylase 4D
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q6B0I6 (KDM4D_HUMAN) Organism: Homo sapiens
Gene Symbol: KDM4D Gene ID: 55693
Pocket Descriptors
Volume: 1611.07 Depth: 32.1098
Hydrophobicity: 0.658793 Drug Score: 0.945265
Pocket Similarity: Calculate
Ligand
Ligand Name:   [[(2~{R})-2-(5-phenylpentanoylamino)-2-(2~{H}-1,2,3,4-tetrazol-5-yl)ethanoyl]amino]azanium
HET ID:   FJB PubChem:   145864178
DrugBank:   - ChEMBL:   -
Canonical SMILES:   [NH3+]NC(=O)[C@@H](c1n[nH]nn1)NC(=O)CCCCc1ccccc1
Standard InChI:   InChI=1S/C14H19N7O2/c15-17-14(23)12(13-18-20-21-19-13)16-11(22)9-5-4-8-10-6-2-1-3-7-10/h1-3,6-7,12H,4-5,8-9,15H2,(H,16,22)(H,17,23)(H,18,19,20,21)/p+1/t12-/m1/s1
Molecular Formula:   C14H20N7O2+ Mol. Weight:   318.3543 Heavy Atoms:   23
Charge:   1 Is Chiral:   True logP:   -0.1751
HBD:   4 HBA:   7 TPSA:   140.3
#Bonds:   29 #Rotatable Bonds:   10 Shape Complexity:   0.35714287
Stereocomplexity:   0.071428575 Ligand Type:   Small Molecule
Binding Affinity
-