PDB Entry (6f5t) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6f5t | Resolution: 1.58 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: None | |
Protein |
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Protein Name: Lysine-specific demethylase 4D | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q6B0I6 (KDM4D_HUMAN) | Organism: Homo sapiens |
Gene Symbol: KDM4D | Gene ID: 55693 |
Pocket Descriptors | |
Volume: 707.584 | Depth: 19.02 |
Hydrophobicity: 0.668639 | Drug Score: 0.491452 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: ~{N}-oxidanyl-4-(2~{H}-1,2,3,4-tetrazol-5-yl)pyridine-2-carboxamide | ||
HET ID: CQK | PubChem: 135567437 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: ONC(=O)c1nccc(c1)c1n[nH]nn1 | ||
Standard InChI: InChI=1S/C7H6N6O2/c14-7(11-15)5-3-4(1-2-8-5)6-9-12-13-10-6/h1-3,15H,(H,11,14)(H,9,10,12,13) | ||
Molecular Formula: C7H6N6O2 | Mol. Weight: 206.16154 | Heavy Atoms: 15 |
Charge: 0 | Is Chiral: False | logP: -0.2284 |
HBD: 3 | HBA: 7 | TPSA: 116.68 |
#Bonds: 17 | #Rotatable Bonds: 3 | Shape Complexity: 0.0 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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