PDB Entry (2v8y)

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Visualizer: MichelaNGLo

PDB ID: 2v8y Resolution: 2.1 Å Exp. Method: X-RAY DIFFRACTION
PMID: 17631896 DOI: 10.1016/j.jmb.2007.06.033
Protein
Protein Name: Eukaryotic translation initiation factor 4E
Protein Class: TRANSLATION REGULATOR
Uniprot ID/ACC: P06730 (IF4E_HUMAN) Organism: Homo sapiens
Gene Symbol: EIF4E Gene ID: 1977
Pocket Descriptors
Volume: 417.856 Depth: 13.2399
Hydrophobicity: 0.702479 Drug Score: 0.258417
Pocket Similarity: Calculate
Ligand
Ligand Name:   P-FLUORO-7-BENZYL GUANINE MONOPHOSPHATE
HET ID:   MGV PubChem:   135566347, 16750127
DrugBank:   - ChEMBL:   CHEMBL1234308
Canonical SMILES:   O[C@@H]1[C@H](O)[C@H](O[C@H]1n1c[n+](c2c1nc(N)[nH]c2=O)Cc1ccc(cc1)F)COP(=O)(O)O
Standard InChI:   InChI=1S/C17H19FN5O8P/c18-9-3-1-8(2-4-9)5-22-7-23(14-11(22)15(26)21-17(19)20-14)16-13(25)12(24)10(31-16)6-30-32(27,28)29/h1-4,7,10,12-13,16,24-25H,5-6H2,(H4-,19,20,21,26,27,28,29)/p+1/t10-,12-,13-,16-/m1/s1
Molecular Formula:   C17H20FN5O8P+ Mol. Weight:   472.34155 Heavy Atoms:   32
Charge:   1 Is Chiral:   True logP:   -0.9086
HBD:   6 HBA:   11 TPSA:   206.84
#Bonds:   40 #Rotatable Bonds:   6 Shape Complexity:   0.3529412
Stereocomplexity:   0.23529412 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
BindingDB Kd : 7510 nM, Kd : 8220 nM
Binding MOAD Kd : 1960 nM