PDB Entry (2v8y) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 2v8y | Resolution: 2.1 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 17631896 | DOI: 10.1016/j.jmb.2007.06.033 | |
Protein |
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Protein Name: Eukaryotic translation initiation factor 4E | |
Protein Class: TRANSLATION REGULATOR | |
Uniprot ID/ACC: P06730 (IF4E_HUMAN) | Organism: Homo sapiens |
Gene Symbol: EIF4E | Gene ID: 1977 |
Pocket Descriptors | |
Volume: 417.856 | Depth: 13.2399 |
Hydrophobicity: 0.702479 | Drug Score: 0.258417 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: P-FLUORO-7-BENZYL GUANINE MONOPHOSPHATE | ||
HET ID: MGV | PubChem: 135566347, 16750127 | |
DrugBank: - | ChEMBL: CHEMBL1234308 | |
Canonical SMILES: O[C@@H]1[C@H](O)[C@H](O[C@H]1n1c[n+](c2c1nc(N)[nH]c2=O)Cc1ccc(cc1)F)COP(=O)(O)O | ||
Standard InChI: InChI=1S/C17H19FN5O8P/c18-9-3-1-8(2-4-9)5-22-7-23(14-11(22)15(26)21-17(19)20-14)16-13(25)12(24)10(31-16)6-30-32(27,28)29/h1-4,7,10,12-13,16,24-25H,5-6H2,(H4-,19,20,21,26,27,28,29)/p+1/t10-,12-,13-,16-/m1/s1 | ||
Molecular Formula: C17H20FN5O8P+ | Mol. Weight: 472.34155 | Heavy Atoms: 32 |
Charge: 1 | Is Chiral: True | logP: -0.9086 |
HBD: 6 | HBA: 11 | TPSA: 206.84 |
#Bonds: 40 | #Rotatable Bonds: 6 | Shape Complexity: 0.3529412 |
Stereocomplexity: 0.23529412 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
BindingDB | Kd : 7510 nM, Kd : 8220 nM |
Binding MOAD | Kd : 1960 nM |