PDB Entry (6f5q) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6f5q | Resolution: 1.43 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: None | |
Protein |
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Protein Name: Lysine-specific demethylase 4D | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q6B0I6 (KDM4D_HUMAN) | Organism: Homo sapiens |
Gene Symbol: KDM4D | Gene ID: 55693 |
Pocket Descriptors | |
Volume: 871.36 | Depth: 18.7659 |
Hydrophobicity: 0.650602 | Drug Score: 0.645331 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 2-[2-(methylsulfonylamino)ethylamino]pyridine-4-carboxylic acid | ||
HET ID: CTK | PubChem: 43420766 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: OC(=O)c1ccnc(c1)NCCNS(=O)(=O)C | ||
Standard InChI: InChI=1S/C9H13N3O4S/c1-17(15,16)12-5-4-11-8-6-7(9(13)14)2-3-10-8/h2-3,6,12H,4-5H2,1H3,(H,10,11)(H,13,14) | ||
Molecular Formula: C9H13N3O4S | Mol. Weight: 259.28223 | Heavy Atoms: 17 |
Charge: 0 | Is Chiral: False | logP: 1.2856 |
HBD: 3 | HBA: 7 | TPSA: 116.77 |
#Bonds: 17 | #Rotatable Bonds: 6 | Shape Complexity: 0.33333334 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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