PDB Entry (6f5r) Download |
||
Visualizer: MichelaNGLo |
||
PDB ID: 6f5r | Resolution: 1.61 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: None | |
Protein |
|
Protein Name: Lysine-specific demethylase 4D | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q6B0I6 (KDM4D_HUMAN) | Organism: Homo sapiens |
Gene Symbol: KDM4D | Gene ID: 55693 |
Pocket Descriptors | |
Volume: 992.64 | Depth: 22.6168 |
Hydrophobicity: 0.655172 | Drug Score: 0.518886 |
Pocket Similarity: Calculate |
Ligand |
||
Ligand Name: 2-(3-oxidanylpropylamino)pyridine-4-carboxylic acid | ||
HET ID: CQZ | PubChem: 53408821 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: OCCCNc1nccc(c1)C(=O)O | ||
Standard InChI: InChI=1S/C9H12N2O3/c12-5-1-3-10-8-6-7(9(13)14)2-4-11-8/h2,4,6,12H,1,3,5H2,(H,10,11)(H,13,14) | ||
Molecular Formula: C9H12N2O3 | Mol. Weight: 196.20319 | Heavy Atoms: 14 |
Charge: 0 | Is Chiral: False | logP: 0.6471 |
HBD: 3 | HBA: 5 | TPSA: 82.45 |
#Bonds: 14 | #Rotatable Bonds: 5 | Shape Complexity: 0.33333334 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
||
- |