PDB Entry (6f5r)

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Visualizer: MichelaNGLo

PDB ID: 6f5r Resolution: 1.61 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: Lysine-specific demethylase 4D
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q6B0I6 (KDM4D_HUMAN) Organism: Homo sapiens
Gene Symbol: KDM4D Gene ID: 55693
Pocket Descriptors
Volume: 992.64 Depth: 22.6168
Hydrophobicity: 0.655172 Drug Score: 0.518886
Pocket Similarity: Calculate
Ligand
Ligand Name:   2-(3-oxidanylpropylamino)pyridine-4-carboxylic acid
HET ID:   CQZ PubChem:   53408821
DrugBank:   - ChEMBL:   -
Canonical SMILES:   OCCCNc1nccc(c1)C(=O)O
Standard InChI:   InChI=1S/C9H12N2O3/c12-5-1-3-10-8-6-7(9(13)14)2-4-11-8/h2,4,6,12H,1,3,5H2,(H,10,11)(H,13,14)
Molecular Formula:   C9H12N2O3 Mol. Weight:   196.20319 Heavy Atoms:   14
Charge:   0 Is Chiral:   False logP:   0.6471
HBD:   3 HBA:   5 TPSA:   82.45
#Bonds:   14 #Rotatable Bonds:   5 Shape Complexity:   0.33333334
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
-