PDB Entry (5m7z)

Download

Visualizer: MichelaNGLo

PDB ID: 5m7z Resolution: 1.69 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: Eukaryotic translation initiation factor 4E
Protein Class: TRANSLATION REGULATOR
Uniprot ID/ACC: P63073 (IF4E_MOUSE) Organism: Mus musculus
Gene Symbol: Eif4e Gene ID: 13684
Pocket Descriptors
Volume: 189.376 Depth: 16.4015
Hydrophobicity: 0.719298 Drug Score: 0.0105563
Pocket Similarity: Calculate
Ligand
Ligand Name:   [[[(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanyl-purin-7-ium-9-yl)-4-methoxy-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-selanyl-phosphoryl] [(2~{R},3~{S},4~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate
HET ID:   7LO PubChem:   135567228
DrugBank:   - ChEMBL:   -
Canonical SMILES:   CO[C@@H]1[C@H](O)[C@H](O[C@H]1n1c[n+](c2c1nc(N)nc2O)C)CO[P@](=O)(O[P@](=O)(OP(=O)(O)O)[SeH])O
Standard InChI:   InChI=1S/C12H20N5O13P3Se/c1-16-4-17(9-6(16)10(19)15-12(13)14-9)11-8(26-2)7(18)5(28-11)3-27-32(23,24)30-33(25,34)29-31(20,21)22/h4-5,7-8,11,18H,3H2,1-2H3,(H6-,13,14,15,19,20,21,22,23,24,25,34)/p+1/t5-,7-,8-,11-,33+/m1/s1
Molecular Formula:   C12H21N5O13P3Se+ Mol. Weight:   615.20215 Heavy Atoms:   34
Charge:   1 Is Chiral:   True logP:   -0.9699
HBD:   7 HBA:   17 TPSA:   288.55
#Bonds:   41 #Rotatable Bonds:   9 Shape Complexity:   0.5833333
Stereocomplexity:   0.5 Ligand Type:   Small Molecule
Binding Affinity
-