PDB Entry (5fyu) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 5fyu | Resolution: 2.06 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: None | |
Protein |
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Protein Name: Lysine-specific demethylase 5B | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q9UGL1 (KDM5B_HUMAN) | Organism: Homo sapiens |
Gene Symbol: KDM5B | Gene ID: 10765 |
Pocket Descriptors | |
Volume: 1244.54 | Depth: 25.0898 |
Hydrophobicity: 0.660793 | Drug Score: 0.689461 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: (3R)-3-azanyl-4-methyl-1,3-dihydroindol-2-one | ||
HET ID: BY4 | PubChem: 26722529 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: O=C1Nc2c([C@H]1N)c(C)ccc2 | ||
Standard InChI: InChI=1S/C9H10N2O/c1-5-3-2-4-6-7(5)8(10)9(12)11-6/h2-4,8H,10H2,1H3,(H,11,12)/t8-/m1/s1 | ||
Molecular Formula: C9H10N2O | Mol. Weight: 162.1885 | Heavy Atoms: 12 |
Charge: 0 | Is Chiral: True | logP: 1.7852 |
HBD: 2 | HBA: 3 | TPSA: 55.12 |
#Bonds: 14 | #Rotatable Bonds: 0 | Shape Complexity: 0.22222222 |
Stereocomplexity: 0.11111111 | Ligand Type: Small Molecule |
Binding Affinity |
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