PDB Entry (5fyu)

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Visualizer: MichelaNGLo

PDB ID: 5fyu Resolution: 2.06 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: Lysine-specific demethylase 5B
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q9UGL1 (KDM5B_HUMAN) Organism: Homo sapiens
Gene Symbol: KDM5B Gene ID: 10765
Pocket Descriptors
Volume: 1244.54 Depth: 25.0898
Hydrophobicity: 0.660793 Drug Score: 0.689461
Pocket Similarity: Calculate
Ligand
Ligand Name:   (3R)-3-azanyl-4-methyl-1,3-dihydroindol-2-one
HET ID:   BY4 PubChem:   26722529
DrugBank:   - ChEMBL:   -
Canonical SMILES:   O=C1Nc2c([C@H]1N)c(C)ccc2
Standard InChI:   InChI=1S/C9H10N2O/c1-5-3-2-4-6-7(5)8(10)9(12)11-6/h2-4,8H,10H2,1H3,(H,11,12)/t8-/m1/s1
Molecular Formula:   C9H10N2O Mol. Weight:   162.1885 Heavy Atoms:   12
Charge:   0 Is Chiral:   True logP:   1.7852
HBD:   2 HBA:   3 TPSA:   55.12
#Bonds:   14 #Rotatable Bonds:   0 Shape Complexity:   0.22222222
Stereocomplexity:   0.11111111 Ligand Type:   Small Molecule
Binding Affinity
-