PDB Entry (5h19)

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Visualizer: MichelaNGLo

PDB ID: 5h19 Resolution: 1.9 Å Exp. Method: X-RAY DIFFRACTION
PMID: 28072869 DOI: 10.1371/journal.pone.0169855
Protein
Protein Name: Polycomb protein EED
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: O75530 (EED_HUMAN) Organism: Homo sapiens
Gene Symbol: EED Gene ID: 8726
Pocket Descriptors
Volume: 349.952 Depth: 13.914
Hydrophobicity: 0.742857 Drug Score: 0.0917754
Pocket Similarity: Calculate
Ligand
Ligand Name:   5-(furan-2-ylmethylamino)-9-(phenylmethyl)-8,10-dihydro-7H-[1,2,4]triazolo[3,4-a][2,7]naphthyridine-6-carbonitrile
HET ID:   LQF PubChem:   29111296
DrugBank:   - ChEMBL:   CHEMBL4096234
Canonical SMILES:   N#Cc1c2CCN(Cc2c2n(c1NCc1ccco1)cnn2)Cc1ccccc1
Standard InChI:   InChI=1S/C22H20N6O/c23-11-19-18-8-9-27(13-16-5-2-1-3-6-16)14-20(18)22-26-25-15-28(22)21(19)24-12-17-7-4-10-29-17/h1-7,10,15,24H,8-9,12-14H2
Molecular Formula:   C22H20N6O Mol. Weight:   384.4338 Heavy Atoms:   29
Charge:   0 Is Chiral:   False logP:   3.37528
HBD:   1 HBA:   7 TPSA:   82.39
#Bonds:   33 #Rotatable Bonds:   5 Shape Complexity:   0.23809524
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD IC50 : 320 nM