PDB Entry (5lwb)

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Visualizer: MichelaNGLo

PDB ID: 5lwb Resolution: 2.39 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: Lysine-specific demethylase 5B
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q9UGL1 (KDM5B_HUMAN) Organism: Homo sapiens
Gene Symbol: KDM5B Gene ID: 10765
Pocket Descriptors
Volume: 900.48 Depth: 17.3022
Hydrophobicity: 0.666667 Drug Score: 0.724609
Pocket Similarity: Calculate
Ligand
Ligand Name:   5-[1-[2-(dimethylamino)ethyl]pyrazol-4-yl]-7-oxidanylidene-6-propan-2-yl-6~{H}-pyrazolo[1,5-a]pyrimidine-3-carbonitrile
HET ID:   79H PubChem:   137348577, 138753103
DrugBank:   - ChEMBL:   -
Canonical SMILES:   N#Cc1cnn2c1N=C(c1cnn(c1)CCN(C)C)C(C2=O)C(C)C
Standard InChI:   InChI=1S/C17H21N7O/c1-11(2)14-15(13-9-19-23(10-13)6-5-22(3)4)21-16-12(7-18)8-20-24(16)17(14)25/h8-11,14H,5-6H2,1-4H3
Molecular Formula:   C17H21N7O Mol. Weight:   339.39493 Heavy Atoms:   25
Charge:   0 Is Chiral:   True logP:   0.99528
HBD:   0 HBA:   8 TPSA:   92.1
#Bonds:   27 #Rotatable Bonds:   5 Shape Complexity:   0.5
Stereocomplexity:   0.05882353 Ligand Type:   Small Molecule
Binding Affinity
-