PDB Entry (5lwb) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 5lwb | Resolution: 2.39 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: None | |
Protein |
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Protein Name: Lysine-specific demethylase 5B | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q9UGL1 (KDM5B_HUMAN) | Organism: Homo sapiens |
Gene Symbol: KDM5B | Gene ID: 10765 |
Pocket Descriptors | |
Volume: 900.48 | Depth: 17.3022 |
Hydrophobicity: 0.666667 | Drug Score: 0.724609 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 5-[1-[2-(dimethylamino)ethyl]pyrazol-4-yl]-7-oxidanylidene-6-propan-2-yl-6~{H}-pyrazolo[1,5-a]pyrimidine-3-carbonitrile | ||
HET ID: 79H | PubChem: 137348577, 138753103 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: N#Cc1cnn2c1N=C(c1cnn(c1)CCN(C)C)C(C2=O)C(C)C | ||
Standard InChI: InChI=1S/C17H21N7O/c1-11(2)14-15(13-9-19-23(10-13)6-5-22(3)4)21-16-12(7-18)8-20-24(16)17(14)25/h8-11,14H,5-6H2,1-4H3 | ||
Molecular Formula: C17H21N7O | Mol. Weight: 339.39493 | Heavy Atoms: 25 |
Charge: 0 | Is Chiral: True | logP: 0.99528 |
HBD: 0 | HBA: 8 | TPSA: 92.1 |
#Bonds: 27 | #Rotatable Bonds: 5 | Shape Complexity: 0.5 |
Stereocomplexity: 0.05882353 | Ligand Type: Small Molecule |
Binding Affinity |
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