PDB Entry (2v8x)

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Visualizer: MichelaNGLo

PDB ID: 2v8x Resolution: 2.3 Å Exp. Method: X-RAY DIFFRACTION
PMID: 17631896 DOI: 10.1016/j.jmb.2007.06.033
Protein
Protein Name: Eukaryotic translation initiation factor 4E
Protein Class: TRANSLATION REGULATOR
Uniprot ID/ACC: P06730 (IF4E_HUMAN) Organism: Homo sapiens
Gene Symbol: EIF4E Gene ID: 1977
Pocket Descriptors
Volume: 430.272 Depth: 12.9628
Hydrophobicity: 0.702479 Drug Score: 0.36495
Pocket Similarity: Calculate
Ligand
Ligand Name:   7-BENZYL GUANINE MONOPHOSPHATE
HET ID:   MGQ PubChem:   135566346, 13872081
DrugBank:   - ChEMBL:   CHEMBL1234304
Canonical SMILES:   O[C@@H]1[C@H](O)[C@H](O[C@H]1n1c[n+](c2c1nc(N)[nH]c2=O)Cc1ccccc1)COP(=O)(O)O
Standard InChI:   InChI=1S/C17H20N5O8P/c18-17-19-14-11(15(25)20-17)21(6-9-4-2-1-3-5-9)8-22(14)16-13(24)12(23)10(30-16)7-29-31(26,27)28/h1-5,8,10,12-13,16,23-24H,6-7H2,(H4-,18,19,20,25,26,27,28)/p+1/t10-,12-,13-,16-/m1/s1
Molecular Formula:   C17H21N5O8P+ Mol. Weight:   454.3511 Heavy Atoms:   31
Charge:   1 Is Chiral:   True logP:   -1.0477
HBD:   6 HBA:   11 TPSA:   206.84
#Bonds:   39 #Rotatable Bonds:   6 Shape Complexity:   0.3529412
Stereocomplexity:   0.23529412 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
BindingDB Kd : 790 nM, Kd : 1320 nM, Kd : 15500 nM, Kd : 26800 nM
Binding MOAD Kd : 6950 nM