PDB Entry (6ej0)

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Visualizer: MichelaNGLo

PDB ID: 6ej0 Resolution: 2.06 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: Lysine-specific demethylase 5B
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q9UGL1 (KDM5B_HUMAN) Organism: Homo sapiens
Gene Symbol: KDM5B Gene ID: 10765
Pocket Descriptors
Volume: 1649.09 Depth: 33.7639
Hydrophobicity: 0.676871 Drug Score: 0.869816
Pocket Similarity: Calculate
Ligand
Ligand Name:   7-oxidanylidene-6-propan-2-yl-5-[1-(1-prop-2-enoylpiperidin-4-yl)pyrazol-4-yl]-6~{H}-pyrazolo[1,5-a]pyrimidine-3-carbonitrile
HET ID:   B7K PubChem:   138753137
DrugBank:   - ChEMBL:   -
Canonical SMILES:   C=CC(=O)N1CCC(CC1)n1ncc(c1)C1=Nc2c(C#N)cnn2C(=O)C1C(C)C
Standard InChI:   InChI=1S/C21H23N7O2/c1-4-17(29)26-7-5-16(6-8-26)27-12-15(11-23-27)19-18(13(2)3)21(30)28-20(25-19)14(9-22)10-24-28/h4,10-13,16,18H,1,5-8H2,2-3H3
Molecular Formula:   C21H23N7O2 Mol. Weight:   405.45303 Heavy Atoms:   30
Charge:   0 Is Chiral:   True logP:   1.72108
HBD:   0 HBA:   9 TPSA:   109.17
#Bonds:   33 #Rotatable Bonds:   5 Shape Complexity:   0.45
Stereocomplexity:   0.04761905 Ligand Type:   Small Molecule
Binding Affinity
-