PDB Entry (5j5y)

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Visualizer: MichelaNGLo

PDB ID: 5j5y Resolution: 1.75 Å Exp. Method: X-RAY DIFFRACTION
PMID: 28666355 DOI: 10.1093/nar/gkx569
Protein
Protein Name: Eukaryotic translation initiation factor 4E
Protein Class: TRANSLATION REGULATOR
Uniprot ID/ACC: P06730 (IF4E_HUMAN) Organism: Homo sapiens
Gene Symbol: EIF4E Gene ID: 1977
Pocket Descriptors
Volume: 155.008 Depth: 15.0006
Hydrophobicity: 0.715596 Drug Score: 0.0155024
Pocket Similarity: Calculate
Ligand
Ligand Name:   2-amino-9-{5-O-[(R)-{[(S)-{dichloro[(R)-hydroxy(phosphonooxy)phosphoryl]methyl}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-2-O-methyl-beta-D-ribofuranosyl}-7-methyl-9H-purin-7-ium-6-olate
HET ID:   6G6 PubChem:   137348463
DrugBank:   - ChEMBL:   -
Canonical SMILES:   CO[C@@H]1[C@H](O)[C@H](O[C@H]1n1c[n+](c2c1nc(N)nc2[O-])C)CO[P@](=O)(O[P@](=O)(C(P(=O)(O)O)(Cl)Cl)O)O
Standard InChI:   InChI=1S/C13H20Cl2N5O13P3/c1-19-4-20(9-6(19)10(22)18-12(16)17-9)11-8(30-2)7(21)5(32-11)3-31-36(28,29)33-35(26,27)13(14,15)34(23,24)25/h4-5,7-8,11,21H,3H2,1-2H3,(H6-,16,17,18,22,23,24,25,26,27,28,29)/t5-,7-,8-,11-/m1/s1
Molecular Formula:   C13H20Cl2N5O13P3 Mol. Weight:   618.1509 Heavy Atoms:   36
Charge:   0 Is Chiral:   True logP:   0.4219
HBD:   6 HBA:   17 TPSA:   302.38
#Bonds:   42 #Rotatable Bonds:   9 Shape Complexity:   0.61538464
Stereocomplexity:   0.46153846 Ligand Type:   Small Molecule
Binding Affinity
-