PDB Entry (6h4o) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6h4o | Resolution: 2.25 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 31158747 | DOI: 10.1016/j.ejmech.2019.05.041 | |
Protein |
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Protein Name: Lysine-specific demethylase 4A | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: O75164 (KDM4A_HUMAN) | Organism: Homo sapiens |
Gene Symbol: KDM4A | Gene ID: 9682 |
Pocket Descriptors | |
Volume: 292.224 | Depth: 31.3376 |
Hydrophobicity: 0.72043 | Drug Score: 0.0106065 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 8-[4-[2-[4-[3-(trifluoromethyl)phenyl]piperidin-1-yl]ethyl]pyrazol-1-yl]-3~{H}-pyrido[3,4-d]pyrimidin-4-one | ||
HET ID: FQH | PubChem: 127032361, 137175122 | |
DrugBank: - | ChEMBL: CHEMBL3775548 | |
Canonical SMILES: O=c1[nH]cnc2c1ccnc2n1ncc(c1)CCN1CCC(CC1)c1cccc(c1)C(F)(F)F | ||
Standard InChI: InChI=1S/C24H23F3N6O/c25-24(26,27)19-3-1-2-18(12-19)17-6-10-32(11-7-17)9-5-16-13-31-33(14-16)22-21-20(4-8-28-22)23(34)30-15-29-21/h1-4,8,12-15,17H,5-7,9-11H2,(H,29,30,34) | ||
Molecular Formula: C24H23F3N6O | Mol. Weight: 468.47424 | Heavy Atoms: 34 |
Charge: 0 | Is Chiral: False | logP: 3.8826 |
HBD: 1 | HBA: 6 | TPSA: 79.7 |
#Bonds: 39 | #Rotatable Bonds: 6 | Shape Complexity: 0.33333334 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
Binding MOAD | IC50 : 128 nM |