PDB Entry (6h4o)

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Visualizer: MichelaNGLo

PDB ID: 6h4o Resolution: 2.25 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31158747 DOI: 10.1016/j.ejmech.2019.05.041
Protein
Protein Name: Lysine-specific demethylase 4A
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: O75164 (KDM4A_HUMAN) Organism: Homo sapiens
Gene Symbol: KDM4A Gene ID: 9682
Pocket Descriptors
Volume: 292.224 Depth: 31.3376
Hydrophobicity: 0.72043 Drug Score: 0.0106065
Pocket Similarity: Calculate
Ligand
Ligand Name:   8-[4-[2-[4-[3-(trifluoromethyl)phenyl]piperidin-1-yl]ethyl]pyrazol-1-yl]-3~{H}-pyrido[3,4-d]pyrimidin-4-one
HET ID:   FQH PubChem:   127032361, 137175122
DrugBank:   - ChEMBL:   CHEMBL3775548
Canonical SMILES:   O=c1[nH]cnc2c1ccnc2n1ncc(c1)CCN1CCC(CC1)c1cccc(c1)C(F)(F)F
Standard InChI:   InChI=1S/C24H23F3N6O/c25-24(26,27)19-3-1-2-18(12-19)17-6-10-32(11-7-17)9-5-16-13-31-33(14-16)22-21-20(4-8-28-22)23(34)30-15-29-21/h1-4,8,12-15,17H,5-7,9-11H2,(H,29,30,34)
Molecular Formula:   C24H23F3N6O Mol. Weight:   468.47424 Heavy Atoms:   34
Charge:   0 Is Chiral:   False logP:   3.8826
HBD:   1 HBA:   6 TPSA:   79.7
#Bonds:   39 #Rotatable Bonds:   6 Shape Complexity:   0.33333334
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD IC50 : 128 nM