PDB Entry (6h4x)

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Visualizer: MichelaNGLo

PDB ID: 6h4x Resolution: 2.34 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31158747 DOI: 10.1016/j.ejmech.2019.05.041
Protein
Protein Name: Lysine-specific demethylase 4A
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: O75164 (KDM4A_HUMAN) Organism: Homo sapiens
Gene Symbol: KDM4A Gene ID: 9682
Pocket Descriptors
Volume: 167.808 Depth: 15.9105
Hydrophobicity: 0.685185 Drug Score: 0.0137516
Pocket Similarity: Calculate
Ligand
Ligand Name:   8-[4-[2-[4-(4-pyridin-3-ylphenyl)piperidin-1-yl]ethyl]pyrazol-1-yl]-3~{H}-pyrido[3,4-d]pyrimidin-4-one
HET ID:   FNQ PubChem:   138753208
DrugBank:   - ChEMBL:   -
Canonical SMILES:   O=c1[nH]cnc2c1ccnc2n1ncc(c1)CCN1CCC(CC1)c1ccc(cc1)c1cccnc1
Standard InChI:   InChI=1S/C28H27N7O/c36-28-25-7-12-30-27(26(25)31-19-32-28)35-18-20(16-33-35)8-13-34-14-9-23(10-15-34)21-3-5-22(6-4-21)24-2-1-11-29-17-24/h1-7,11-12,16-19,23H,8-10,13-15H2,(H,31,32,36)
Molecular Formula:   C28H27N7O Mol. Weight:   477.56027 Heavy Atoms:   36
Charge:   0 Is Chiral:   False logP:   3.9258
HBD:   1 HBA:   7 TPSA:   92.59
#Bonds:   42 #Rotatable Bonds:   6 Shape Complexity:   0.25
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD IC50 : 131 nM