PDB Entry (6h4x) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6h4x | Resolution: 2.34 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 31158747 | DOI: 10.1016/j.ejmech.2019.05.041 | |
Protein |
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Protein Name: Lysine-specific demethylase 4A | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: O75164 (KDM4A_HUMAN) | Organism: Homo sapiens |
Gene Symbol: KDM4A | Gene ID: 9682 |
Pocket Descriptors | |
Volume: 167.808 | Depth: 15.9105 |
Hydrophobicity: 0.685185 | Drug Score: 0.0137516 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 8-[4-[2-[4-(4-pyridin-3-ylphenyl)piperidin-1-yl]ethyl]pyrazol-1-yl]-3~{H}-pyrido[3,4-d]pyrimidin-4-one | ||
HET ID: FNQ | PubChem: 138753208 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: O=c1[nH]cnc2c1ccnc2n1ncc(c1)CCN1CCC(CC1)c1ccc(cc1)c1cccnc1 | ||
Standard InChI: InChI=1S/C28H27N7O/c36-28-25-7-12-30-27(26(25)31-19-32-28)35-18-20(16-33-35)8-13-34-14-9-23(10-15-34)21-3-5-22(6-4-21)24-2-1-11-29-17-24/h1-7,11-12,16-19,23H,8-10,13-15H2,(H,31,32,36) | ||
Molecular Formula: C28H27N7O | Mol. Weight: 477.56027 | Heavy Atoms: 36 |
Charge: 0 | Is Chiral: False | logP: 3.9258 |
HBD: 1 | HBA: 7 | TPSA: 92.59 |
#Bonds: 42 | #Rotatable Bonds: 6 | Shape Complexity: 0.25 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
Binding MOAD | IC50 : 131 nM |