PDB Entry (6h4y)

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Visualizer: MichelaNGLo

PDB ID: 6h4y Resolution: 2.38 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31158747 DOI: 10.1016/j.ejmech.2019.05.041
Protein
Protein Name: Lysine-specific demethylase 4A
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: O75164 (KDM4A_HUMAN) Organism: Homo sapiens
Gene Symbol: KDM4A Gene ID: 9682
Pocket Descriptors
Volume: 162.24 Depth: 15.8058
Hydrophobicity: 0.69 Drug Score: 0.0252385
Pocket Similarity: Calculate
Ligand
Ligand Name:   8-[4-[2-[4-[4-(2-morpholin-4-ylethyl)phenyl]piperidin-1-yl]ethyl]pyrazol-1-yl]-3~{H}-pyrido[3,4-d]pyrimidin-4-one
HET ID:   FO8 PubChem:   138753209
DrugBank:   - ChEMBL:   -
Canonical SMILES:   O=c1[nH]cnc2c1ccnc2n1ncc(c1)CCN1CCC(CC1)c1ccc(cc1)CCN1CCOCC1
Standard InChI:   InChI=1S/C29H35N7O2/c37-29-26-5-10-30-28(27(26)31-21-32-29)36-20-23(19-33-36)7-12-34-13-8-25(9-14-34)24-3-1-22(2-4-24)6-11-35-15-17-38-18-16-35/h1-5,10,19-21,25H,6-9,11-18H2,(H,31,32,37)
Molecular Formula:   C29H35N7O2 Mol. Weight:   513.6339 Heavy Atoms:   38
Charge:   0 Is Chiral:   False logP:   2.6764
HBD:   1 HBA:   8 TPSA:   92.17
#Bonds:   44 #Rotatable Bonds:   8 Shape Complexity:   0.44827586
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD IC50 : 77 nM