PDB Entry (6ej1)

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Visualizer: MichelaNGLo

PDB ID: 6ej1 Resolution: 2.07 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: Lysine-specific demethylase 5B
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q9UGL1 (KDM5B_HUMAN) Organism: Homo sapiens
Gene Symbol: KDM5B Gene ID: 10765
Pocket Descriptors
Volume: 767.04 Depth: 16.6908
Hydrophobicity: 0.662338 Drug Score: 0.613394
Pocket Similarity: Calculate
Ligand
Ligand Name:   5-[1-[1-(2-chloranylethanoyl)piperidin-4-yl]pyrazol-4-yl]-7-oxidanylidene-6-propan-2-yl-4~{H}-pyrazolo[1,5-a]pyrimidine-3-carbonitrile
HET ID:   B7Q PubChem:   133054010
DrugBank:   - ChEMBL:   -
Canonical SMILES:   ClCC(=O)N1CCC(CC1)n1ncc(c1)c1[nH]c2c(C#N)cnn2c(=O)c1C(C)C
Standard InChI:   InChI=1S/C20H22ClN7O2/c1-12(2)17-18(25-19-13(8-22)9-24-28(19)20(17)30)14-10-23-27(11-14)15-3-5-26(6-4-15)16(29)7-21/h9-12,15,25H,3-7H2,1-2H3
Molecular Formula:   C20H22ClN7O2 Mol. Weight:   427.8874 Heavy Atoms:   30
Charge:   0 Is Chiral:   False logP:   2.22138
HBD:   1 HBA:   8 TPSA:   112.08
#Bonds:   34 #Rotatable Bonds:   5 Shape Complexity:   0.47368422
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
-