PDB Entry (6ej1) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6ej1 | Resolution: 2.07 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: None | |
Protein |
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Protein Name: Lysine-specific demethylase 5B | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q9UGL1 (KDM5B_HUMAN) | Organism: Homo sapiens |
Gene Symbol: KDM5B | Gene ID: 10765 |
Pocket Descriptors | |
Volume: 767.04 | Depth: 16.6908 |
Hydrophobicity: 0.662338 | Drug Score: 0.613394 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 5-[1-[1-(2-chloranylethanoyl)piperidin-4-yl]pyrazol-4-yl]-7-oxidanylidene-6-propan-2-yl-4~{H}-pyrazolo[1,5-a]pyrimidine-3-carbonitrile | ||
HET ID: B7Q | PubChem: 133054010 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: ClCC(=O)N1CCC(CC1)n1ncc(c1)c1[nH]c2c(C#N)cnn2c(=O)c1C(C)C | ||
Standard InChI: InChI=1S/C20H22ClN7O2/c1-12(2)17-18(25-19-13(8-22)9-24-28(19)20(17)30)14-10-23-27(11-14)15-3-5-26(6-4-15)16(29)7-21/h9-12,15,25H,3-7H2,1-2H3 | ||
Molecular Formula: C20H22ClN7O2 | Mol. Weight: 427.8874 | Heavy Atoms: 30 |
Charge: 0 | Is Chiral: False | logP: 2.22138 |
HBD: 1 | HBA: 8 | TPSA: 112.08 |
#Bonds: 34 | #Rotatable Bonds: 5 | Shape Complexity: 0.47368422 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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