PDB Entry (6h4w) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6h4w | Resolution: 2.81 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 31158747 | DOI: 10.1016/j.ejmech.2019.05.041 | |
Protein |
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Protein Name: Lysine-specific demethylase 4A | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: O75164 (KDM4A_HUMAN) | Organism: Homo sapiens |
Gene Symbol: KDM4A | Gene ID: 9682 |
Pocket Descriptors | |
Volume: 162.88 | Depth: 17.2665 |
Hydrophobicity: 0.666667 | Drug Score: 0.0171781 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 8-[4-[2-[4-(3-chlorophenyl)-4-methyl-piperidin-1-yl]ethyl]pyrazol-1-yl]-3~{H}-pyrido[3,4-d]pyrimidin-4-one | ||
HET ID: FQQ | PubChem: 138393340 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: O=c1[nH]cnc2c1ccnc2n1ncc(c1)CCN1CCC(CC1)(C)C | ||
Standard InChI: InChI=1S/C19H24N6O/c1-19(2)5-9-24(10-6-19)8-4-14-11-23-25(12-14)17-16-15(3-7-20-17)18(26)22-13-21-16/h3,7,11-13H,4-6,8-10H2,1-2H3,(H,21,22,26) | ||
Molecular Formula: C19H24N6O | Mol. Weight: 352.43347 | Heavy Atoms: 26 |
Charge: 0 | Is Chiral: False | logP: 2.1062 |
HBD: 1 | HBA: 6 | TPSA: 79.7 |
#Bonds: 30 | #Rotatable Bonds: 4 | Shape Complexity: 0.47368422 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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