PDB Entry (6h4t) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6h4t | Resolution: 2.38 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 31158747 | DOI: 10.1016/j.ejmech.2019.05.041 | |
Protein |
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Protein Name: Lysine-specific demethylase 4A | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: O75164 (KDM4A_HUMAN) | Organism: Homo sapiens |
Gene Symbol: KDM4A | Gene ID: 9682 |
Pocket Descriptors | |
Volume: 160.64 | Depth: 16.102 |
Hydrophobicity: 0.637097 | Drug Score: 0.0237307 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 8-[4-(2-spiro[1,2-dihydroindene-3,4'-piperidine]-1'-ylethyl)pyrazol-1-yl]-3~{H}-pyrido[3,4-d]pyrimidin-4-one | ||
HET ID: FOW | PubChem: 138393336 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: O=c1[nH]cnc2c1ccnc2n1ncc(c1)CCN1CCC2(CC1)CCc1c2cccc1 | ||
Standard InChI: InChI=1S/C25H26N6O/c32-24-20-6-11-26-23(22(20)27-17-28-24)31-16-18(15-29-31)7-12-30-13-9-25(10-14-30)8-5-19-3-1-2-4-21(19)25/h1-4,6,11,15-17H,5,7-10,12-14H2,(H,27,28,32) | ||
Molecular Formula: C25H26N6O | Mol. Weight: 426.51355 | Heavy Atoms: 32 |
Charge: 0 | Is Chiral: False | logP: 2.9642 |
HBD: 1 | HBA: 6 | TPSA: 79.7 |
#Bonds: 38 | #Rotatable Bonds: 4 | Shape Complexity: 0.36 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
Binding MOAD | Ki : 4 nM |