PDB Entry (6h4t)

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Visualizer: MichelaNGLo

PDB ID: 6h4t Resolution: 2.38 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31158747 DOI: 10.1016/j.ejmech.2019.05.041
Protein
Protein Name: Lysine-specific demethylase 4A
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: O75164 (KDM4A_HUMAN) Organism: Homo sapiens
Gene Symbol: KDM4A Gene ID: 9682
Pocket Descriptors
Volume: 160.64 Depth: 16.102
Hydrophobicity: 0.637097 Drug Score: 0.0237307
Pocket Similarity: Calculate
Ligand
Ligand Name:   8-[4-(2-spiro[1,2-dihydroindene-3,4'-piperidine]-1'-ylethyl)pyrazol-1-yl]-3~{H}-pyrido[3,4-d]pyrimidin-4-one
HET ID:   FOW PubChem:   138393336
DrugBank:   - ChEMBL:   -
Canonical SMILES:   O=c1[nH]cnc2c1ccnc2n1ncc(c1)CCN1CCC2(CC1)CCc1c2cccc1
Standard InChI:   InChI=1S/C25H26N6O/c32-24-20-6-11-26-23(22(20)27-17-28-24)31-16-18(15-29-31)7-12-30-13-9-25(10-14-30)8-5-19-3-1-2-4-21(19)25/h1-4,6,11,15-17H,5,7-10,12-14H2,(H,27,28,32)
Molecular Formula:   C25H26N6O Mol. Weight:   426.51355 Heavy Atoms:   32
Charge:   0 Is Chiral:   False logP:   2.9642
HBD:   1 HBA:   6 TPSA:   79.7
#Bonds:   38 #Rotatable Bonds:   4 Shape Complexity:   0.36
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD Ki : 4 nM