PDB Entry (6h4u) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6h4u | Resolution: 2.21 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 31158747 | DOI: 10.1016/j.ejmech.2019.05.041 | |
Protein |
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Protein Name: Lysine-specific demethylase 4A | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: O75164 (KDM4A_HUMAN) | Organism: Homo sapiens |
Gene Symbol: KDM4A | Gene ID: 9682 |
Pocket Descriptors | |
Volume: 155.84 | Depth: 16.0725 |
Hydrophobicity: 0.663636 | Drug Score: 0.0218435 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 8-[4-(1-methylpiperidin-4-yl)pyrazol-1-yl]-3~{H}-pyrido[3,4-d]pyrimidin-4-one | ||
HET ID: FO2 | PubChem: 138393333 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: CN1CCC(CC1)c1cnn(c1)c1nccc2c1nc[nH]c2=O | ||
Standard InChI: InChI=1S/C16H18N6O/c1-21-6-3-11(4-7-21)12-8-20-22(9-12)15-14-13(2-5-17-15)16(23)19-10-18-14/h2,5,8-11H,3-4,6-7H2,1H3,(H,18,19,23) | ||
Molecular Formula: C16H18N6O | Mol. Weight: 310.35373 | Heavy Atoms: 23 |
Charge: 0 | Is Chiral: False | logP: 1.2509 |
HBD: 1 | HBA: 6 | TPSA: 79.7 |
#Bonds: 27 | #Rotatable Bonds: 2 | Shape Complexity: 0.375 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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