PDB Entry (6h4u)

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Visualizer: MichelaNGLo

PDB ID: 6h4u Resolution: 2.21 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31158747 DOI: 10.1016/j.ejmech.2019.05.041
Protein
Protein Name: Lysine-specific demethylase 4A
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: O75164 (KDM4A_HUMAN) Organism: Homo sapiens
Gene Symbol: KDM4A Gene ID: 9682
Pocket Descriptors
Volume: 155.84 Depth: 16.0725
Hydrophobicity: 0.663636 Drug Score: 0.0218435
Pocket Similarity: Calculate
Ligand
Ligand Name:   8-[4-(1-methylpiperidin-4-yl)pyrazol-1-yl]-3~{H}-pyrido[3,4-d]pyrimidin-4-one
HET ID:   FO2 PubChem:   138393333
DrugBank:   - ChEMBL:   -
Canonical SMILES:   CN1CCC(CC1)c1cnn(c1)c1nccc2c1nc[nH]c2=O
Standard InChI:   InChI=1S/C16H18N6O/c1-21-6-3-11(4-7-21)12-8-20-22(9-12)15-14-13(2-5-17-15)16(23)19-10-18-14/h2,5,8-11H,3-4,6-7H2,1H3,(H,18,19,23)
Molecular Formula:   C16H18N6O Mol. Weight:   310.35373 Heavy Atoms:   23
Charge:   0 Is Chiral:   False logP:   1.2509
HBD:   1 HBA:   6 TPSA:   79.7
#Bonds:   27 #Rotatable Bonds:   2 Shape Complexity:   0.375
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
-