PDB Entry (6h4r)

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Visualizer: MichelaNGLo

PDB ID: 6h4r Resolution: 2.14 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31158747 DOI: 10.1016/j.ejmech.2019.05.041
Protein
Protein Name: Lysine-specific demethylase 4A
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: O75164 (KDM4A_HUMAN) Organism: Homo sapiens
Gene Symbol: KDM4A Gene ID: 9682
Pocket Descriptors
Volume: 169.408 Depth: 16.2091
Hydrophobicity: 0.655462 Drug Score: 0.0119531
Pocket Similarity: Calculate
Ligand
Ligand Name:   8-[4-[2-[4-[4-[2-(dimethylamino)ethyl]phenyl]piperidin-1-yl]ethyl]pyrazol-1-yl]-3~{H}-pyrido[3,4-d]pyrimidin-4-one
HET ID:   FQB PubChem:   138393334
DrugBank:   - ChEMBL:   -
Canonical SMILES:   CN(CCc1ccc(cc1)C1CCN(CC1)CCc1cnn(c1)c1nccc2c1nc[nH]c2=O)C
Standard InChI:   InChI=1S/C27H33N7O/c1-32(2)13-8-20-3-5-22(6-4-20)23-10-15-33(16-11-23)14-9-21-17-31-34(18-21)26-25-24(7-12-28-26)27(35)30-19-29-25/h3-7,12,17-19,23H,8-11,13-16H2,1-2H3,(H,29,30,35)
Molecular Formula:   C27H33N7O Mol. Weight:   471.59723 Heavy Atoms:   35
Charge:   0 Is Chiral:   False logP:   2.9679
HBD:   1 HBA:   7 TPSA:   82.94
#Bonds:   40 #Rotatable Bonds:   8 Shape Complexity:   0.4074074
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD Ki : 0.004000000189989805 nM