PDB Entry (6h4z) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 6h4z | Resolution: 2.3 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 31158747 | DOI: 10.1016/j.ejmech.2019.05.041 | |
Protein |
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Protein Name: Lysine-specific demethylase 5B | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q9UGL1 (KDM5B_HUMAN) | Organism: Homo sapiens |
Gene Symbol: KDM5B | Gene ID: 10765 |
Pocket Descriptors | |
Volume: 853.568 | Depth: 20.7196 |
Hydrophobicity: 0.664474 | Drug Score: 0.6208 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 8-[4-[2-[4-(3-chlorophenyl)piperidin-1-yl]ethyl]pyrazol-1-yl]-3~{H}-pyrido[3,4-d]pyrimidin-4-one | ||
HET ID: FQ5 | PubChem: 127032023, 137175094 | |
DrugBank: - | ChEMBL: CHEMBL3774537 | |
Canonical SMILES: Cc1cnn(c1)c1nccc2c1nc[nH]c2=O | ||
Standard InChI: InChI=1S/C11H9N5O/c1-7-4-15-16(5-7)10-9-8(2-3-12-10)11(17)14-6-13-9/h2-6H,1H3,(H,13,14,17) | ||
Molecular Formula: C11H9N5O | Mol. Weight: 227.22206 | Heavy Atoms: 17 |
Charge: 0 | Is Chiral: False | logP: 0.8122 |
HBD: 1 | HBA: 5 | TPSA: 76.46 |
#Bonds: 20 | #Rotatable Bonds: 1 | Shape Complexity: 0.09090909 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
Binding MOAD | Ki : 2 nM |