PDB Entry (6t7h)

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Visualizer: MichelaNGLo

PDB ID: 6t7h Resolution: 2.32 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: 10.1039/d0sc01944e
Protein
Protein Name: Prothrombin
Protein Class: HYDROLASE
Uniprot ID/ACC: P00734 (THRB_HUMAN) Organism: Homo sapiens
Gene Symbol: F2 Gene ID: 2147
Pocket Descriptors
Volume: 562.432 Depth: 28.2522
Hydrophobicity: 0.670833 Drug Score: 0.168715
Pocket Similarity: Calculate
Ligand
Ligand Name:   macrocycle N14-PR4-A
HET ID:   MRQ PubChem:   154700552
DrugBank:   - ChEMBL:   -
Canonical SMILES:   NC(=N)NCCC[C@@H]1NC(=O)Cc2cccn2C(=O)CN(Cc2ccco2)Cc2c(CSC[C@H](NC1=O)C(=O)N)cccc2
Standard InChI:   InChI=1S/C30H38N8O5S/c31-28(41)25-19-44-18-21-7-2-1-6-20(21)15-37(16-23-9-5-13-43-23)17-27(40)38-12-4-8-22(38)14-26(39)35-24(29(42)36-25)10-3-11-34-30(32)33/h1-2,4-9,12-13,24-25H,3,10-11,14-19H2,(H2,31,41)(H,35,39)(H,36,42)(H4,32,33,34)/t24-,25-/m0/s1
Molecular Formula:   C30H38N8O5S Mol. Weight:   622.73834 Heavy Atoms:   44
Charge:   0 Is Chiral:   True logP:   3.4179
HBD:   6 HBA:   14 TPSA:   226.87
#Bonds:   49 #Rotatable Bonds:   8 Shape Complexity:   0.36666667
Stereocomplexity:   0.06666667 Ligand Type:   Small Molecule
Binding Affinity
-