PDB Entry (6h4s)

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Visualizer: MichelaNGLo

PDB ID: 6h4s Resolution: 2.45 Å Exp. Method: X-RAY DIFFRACTION
PMID: 31158747 DOI: 10.1016/j.ejmech.2019.05.041
Protein
Protein Name: Lysine-specific demethylase 4A
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: O75164 (KDM4A_HUMAN) Organism: Homo sapiens
Gene Symbol: KDM4A Gene ID: 9682
Pocket Descriptors
Volume: 159.424 Depth: 16.2201
Hydrophobicity: 0.663462 Drug Score: 0.0165365
Pocket Similarity: Calculate
Ligand
Ligand Name:   8-[4-[2-[4-[3-[2-(dimethylamino)ethyl]phenyl]piperidin-1-yl]ethyl]pyrazol-1-yl]-3~{H}-pyrido[3,4-d]pyrimidin-4-one
HET ID:   FQE PubChem:   138753211
DrugBank:   - ChEMBL:   -
Canonical SMILES:   CN(C)CCC1=CC(=CC=C1)C2CCN(CC2)CCC3=CN(N=C3)C4=NC=CC5=C4N=CNC5=O
Standard InChI:   InChI=1S/C27H33N7O/c1-32(2)12-7-20-4-3-5-23(16-20)22-9-14-33(15-10-22)13-8-21-17-31-34(18-21)26-25-24(6-11-28-26)27(35)30-19-29-25/h3-6,11,16-19,22H,7-10,12-15H2,1-2H3,(H,29,30,35)
Molecular Formula:   C27H33N7O Mol. Weight:   471.59723 Heavy Atoms:   35
Charge:   0 Is Chiral:   False logP:   2.9679
HBD:   1 HBA:   7 TPSA:   82.94
#Bonds:   39 #Rotatable Bonds:   8 Shape Complexity:   0.4074074
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD Ki : 2 nM