PDB Entry (6vkq)

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Visualizer: MichelaNGLo

PDB ID: 6vkq Resolution: 2.9 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32241924 DOI: 10.1126/science.aax6367
Protein
Protein Name: Poly [ADP-ribose] polymerase 1
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: P09874 (PARP1_HUMAN) Organism: Homo sapiens
Gene Symbol: PARP1 Gene ID: 142
Pocket Descriptors
Volume: 211.328 Depth: 26.0541
Hydrophobicity: 0.645022 Drug Score: 0.00599506
Pocket Similarity: Calculate
Ligand
Ligand Name:   2-[4-[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]carbonylpiperazin-1-yl]-N-(1-oxidanylidene-2,3-dihydroisoindol-4-yl)ethanamide
HET ID:   UHB PubChem:   9871899
DrugBank:   - ChEMBL:   -
Canonical SMILES:   O=C(Nc1cccc2c1CNC2=O)CN1CCN(CC1)C(=O)[C@H]1O[C@H]([C@@H]([C@@H]1O)O)n1cnc2c1ncnc2N
Standard InChI:   InChI=1S/C24H27N9O6/c25-20-16-21(28-10-27-20)33(11-29-16)24-18(36)17(35)19(39-24)23(38)32-6-4-31(5-7-32)9-15(34)30-14-3-1-2-12-13(14)8-26-22(12)37/h1-3,10-11,17-19,24,35-36H,4-9H2,(H,26,37)(H,30,34)(H2,25,27,28)/t17-,18+,19-,24+/m0/s1
Molecular Formula:   C24H27N9O6 Mol. Weight:   537.5279 Heavy Atoms:   39
Charge:   0 Is Chiral:   True logP:   -1.0872
HBD:   5 HBA:   15 TPSA:   201.06
#Bonds:   48 #Rotatable Bonds:   7 Shape Complexity:   0.41666666
Stereocomplexity:   0.16666667 Ligand Type:   Small Molecule
Binding Affinity
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