PDB Entry (5f5c)

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Visualizer: MichelaNGLo

PDB ID: 5f5c Resolution: 1.88 Å Exp. Method: X-RAY DIFFRACTION
PMID: 26741168 DOI: 10.1021/acs.jmedchem.5b01635
Protein
Protein Name: Lysine-specific demethylase 4D
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q6B0I6 (KDM4D_HUMAN) Organism: Homo sapiens
Gene Symbol: KDM4D Gene ID: 55693
Pocket Descriptors
Volume: 874.816 Depth: 18.6376
Hydrophobicity: 0.678571 Drug Score: 0.732205
Pocket Similarity: Calculate
Ligand
Ligand Name:   8-[[(phenylmethyl)amino]methyl]-1~{H}-pyrido[3,4-d]pyrimidin-4-one
HET ID:   5V3 PubChem:   135567116
DrugBank:   - ChEMBL:   CHEMBL3775615
Canonical SMILES:   O=c1nc[nH]c2c1ccnc2CNCc1ccccc1
Standard InChI:   InChI=1S/C15H14N4O/c20-15-12-6-7-17-13(14(12)18-10-19-15)9-16-8-11-4-2-1-3-5-11/h1-7,10,16H,8-9H2,(H,18,19,20)
Molecular Formula:   C15H14N4O Mol. Weight:   266.29785 Heavy Atoms:   20
Charge:   0 Is Chiral:   False logP:   1.9988
HBD:   2 HBA:   4 TPSA:   70.67
#Bonds:   23 #Rotatable Bonds:   4 Shape Complexity:   0.13333334
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
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