PDB Entry (5f5a)

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Visualizer: MichelaNGLo

PDB ID: 5f5a Resolution: 1.41 Å Exp. Method: X-RAY DIFFRACTION
PMID: 26741168 DOI: 10.1021/acs.jmedchem.5b01635
Protein
Protein Name: Lysine-specific demethylase 4D
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q6B0I6 (KDM4D_HUMAN) Organism: Homo sapiens
Gene Symbol: KDM4D Gene ID: 55693
Pocket Descriptors
Volume: 831.616 Depth: 19.2997
Hydrophobicity: 0.670659 Drug Score: 0.628321
Pocket Similarity: Calculate
Ligand
Ligand Name:   2-[(furan-2-ylmethylamino)methyl]pyridine-4-carboxylic acid
HET ID:   5V0 PubChem:   73670714
DrugBank:   - ChEMBL:   CHEMBL3775994
Canonical SMILES:   OC(=O)c1ccnc(c1)CNCc1ccco1
Standard InChI:   InChI=1S/C12H12N2O3/c15-12(16)9-3-4-14-10(6-9)7-13-8-11-2-1-5-17-11/h1-6,13H,7-8H2,(H,15,16)
Molecular Formula:   C12H12N2O3 Mol. Weight:   232.23528 Heavy Atoms:   17
Charge:   0 Is Chiral:   False logP:   2.0535
HBD:   2 HBA:   5 TPSA:   75.36
#Bonds:   18 #Rotatable Bonds:   5 Shape Complexity:   0.16666667
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
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