PDB Entry (5f5a) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 5f5a | Resolution: 1.41 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 26741168 | DOI: 10.1021/acs.jmedchem.5b01635 | |
Protein |
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Protein Name: Lysine-specific demethylase 4D | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q6B0I6 (KDM4D_HUMAN) | Organism: Homo sapiens |
Gene Symbol: KDM4D | Gene ID: 55693 |
Pocket Descriptors | |
Volume: 831.616 | Depth: 19.2997 |
Hydrophobicity: 0.670659 | Drug Score: 0.628321 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 2-[(furan-2-ylmethylamino)methyl]pyridine-4-carboxylic acid | ||
HET ID: 5V0 | PubChem: 73670714 | |
DrugBank: - | ChEMBL: CHEMBL3775994 | |
Canonical SMILES: OC(=O)c1ccnc(c1)CNCc1ccco1 | ||
Standard InChI: InChI=1S/C12H12N2O3/c15-12(16)9-3-4-14-10(6-9)7-13-8-11-2-1-5-17-11/h1-6,13H,7-8H2,(H,15,16) | ||
Molecular Formula: C12H12N2O3 | Mol. Weight: 232.23528 | Heavy Atoms: 17 |
Charge: 0 | Is Chiral: False | logP: 2.0535 |
HBD: 2 | HBA: 5 | TPSA: 75.36 |
#Bonds: 18 | #Rotatable Bonds: 5 | Shape Complexity: 0.16666667 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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