PDB Entry (6ie6)

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Visualizer: MichelaNGLo

PDB ID: 6ie6 Resolution: 1.7 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: Protein AGENET DOMAIN (AGD)-CONTAINING P1
Protein Class: TRANSLATION REGULATOR
Uniprot ID/ACC: Q500V5 (AGDP1_ARATH) Organism: Arabidopsis thaliana
Gene Symbol: - Gene ID: 837453
Pocket Descriptors
Volume: 137.536 Depth: 8.77269
Hydrophobicity: 0.8 Drug Score: 0.242278
Pocket Similarity: Calculate
Ligand
Ligand Name:   N-DIMETHYL-LYSINE
HET ID:   MLY PubChem:   193344
DrugBank:   DB03362 ChEMBL:   CHEMBL1234365
Canonical SMILES:   CN(CCCC[C@@H](C(=O)O)N)C
Standard InChI:   InChI=1S/C8H18N2O2/c1-10(2)6-4-3-5-7(9)8(11)12/h7H,3-6,9H2,1-2H3,(H,11,12)/t7-/m0/s1
Molecular Formula:   C8H18N2O2 Mol. Weight:   174.24072 Heavy Atoms:   12
Charge:   0 Is Chiral:   True logP:   0.8305
HBD:   2 HBA:   4 TPSA:   66.56
#Bonds:   12 #Rotatable Bonds:   6 Shape Complexity:   0.875
Stereocomplexity:   0.125 Ligand Type:   H3K9me2
Binding Affinity
-