PDB Entry (6ie7) Download |
||
Visualizer: MichelaNGLo |
||
PDB ID: 6ie7 | Resolution: 2.7 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: - | DOI: None | |
Protein |
|
Protein Name: Protein AGENET DOMAIN (AGD)-CONTAINING P1 | |
Protein Class: TRANSLATION REGULATOR | |
Uniprot ID/ACC: Q500V5 (AGDP1_ARATH) | Organism: Arabidopsis thaliana |
Gene Symbol: - | Gene ID: 837453 |
Pocket Descriptors | |
Volume: 1359.17 | Depth: 34.71 |
Hydrophobicity: 0.666667 | Drug Score: 0.949367 |
Pocket Similarity: Calculate |
Ligand |
||
Ligand Name: N-DIMETHYL-LYSINE | ||
HET ID: MLY | PubChem: 193344 | |
DrugBank: DB03362 | ChEMBL: CHEMBL1234365 | |
Canonical SMILES: CN(CCCC[C@@H](C(=O)O)N)C | ||
Standard InChI: InChI=1S/C8H18N2O2/c1-10(2)6-4-3-5-7(9)8(11)12/h7H,3-6,9H2,1-2H3,(H,11,12)/t7-/m0/s1 | ||
Molecular Formula: C8H18N2O2 | Mol. Weight: 174.24072 | Heavy Atoms: 12 |
Charge: 0 | Is Chiral: True | logP: 0.8305 |
HBD: 2 | HBA: 4 | TPSA: 66.56 |
#Bonds: 12 | #Rotatable Bonds: 6 | Shape Complexity: 0.875 |
Stereocomplexity: 0.125 | Ligand Type: H3K9me2 |
Binding Affinity |
||
- |