PDB Entry (4ft4)

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Visualizer: MichelaNGLo

PDB ID: 4ft4 Resolution: 2.7 Å Exp. Method: X-RAY DIFFRACTION
PMID: 23021223 DOI: 10.1016/j.cell.2012.07.034
Protein
Protein Name: DNA (cytosine-5)-methyltransferase 1
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q9AXT8 (CMT1_MAIZE) Organism: Zea mays
Gene Symbol: - Gene ID: 541827
Pocket Descriptors
Volume: 43.52 Depth: 12.842
Hydrophobicity: 0.754098 Drug Score: 0.140217
Pocket Similarity: Calculate
Ligand
Ligand Name:   N-DIMETHYL-LYSINE
HET ID:   MLY PubChem:   193344
DrugBank:   DB03362 ChEMBL:   CHEMBL1234365
Canonical SMILES:   CN(CCCC[C@@H](C(=O)O)N)C
Standard InChI:   InChI=1S/C8H18N2O2/c1-10(2)6-4-3-5-7(9)8(11)12/h7H,3-6,9H2,1-2H3,(H,11,12)/t7-/m0/s1
Molecular Formula:   C8H18N2O2 Mol. Weight:   174.24072 Heavy Atoms:   12
Charge:   0 Is Chiral:   True logP:   0.8305
HBD:   2 HBA:   4 TPSA:   66.56
#Bonds:   12 #Rotatable Bonds:   6 Shape Complexity:   0.875
Stereocomplexity:   0.125 Ligand Type:   H3K9me2
Binding Affinity
-