PDB Entry (5z8n)

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Visualizer: MichelaNGLo

PDB ID: 5z8n Resolution: 3.1 Å Exp. Method: X-RAY DIFFRACTION
PMID: 30082787 DOI: 10.1038/s41588-018-0187-8
Protein
Protein Name: Chromatin remodeling protein EBS
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: F4JL28 (EBS_ARATH) Organism: Arabidopsis thaliana
Gene Symbol: - Gene ID: 828303
Pocket Descriptors
Volume: 85.568 Depth: 9.88946
Hydrophobicity: 0.862069 Drug Score: 0.0522533
Pocket Similarity: Calculate
Ligand
Ligand Name:   N-DIMETHYL-LYSINE
HET ID:   MLY PubChem:   193344
DrugBank:   DB03362 ChEMBL:   CHEMBL1234365
Canonical SMILES:   CN(CCCC[C@@H](C(=O)O)N)C
Standard InChI:   InChI=1S/C8H18N2O2/c1-10(2)6-4-3-5-7(9)8(11)12/h7H,3-6,9H2,1-2H3,(H,11,12)/t7-/m0/s1
Molecular Formula:   C8H18N2O2 Mol. Weight:   174.24072 Heavy Atoms:   12
Charge:   0 Is Chiral:   True logP:   0.8305
HBD:   2 HBA:   4 TPSA:   66.56
#Bonds:   12 #Rotatable Bonds:   6 Shape Complexity:   0.875
Stereocomplexity:   0.125 Ligand Type:   H3K4me2
Binding Affinity
-