PDB Entry (5z8l) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 5z8l | Resolution: 2.01 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 30082787 | DOI: 10.1038/s41588-018-0187-8 | |
Protein |
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Protein Name: Chromatin remodeling protein EBS | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: F4JL28 (EBS_ARATH) | Organism: Arabidopsis thaliana |
Gene Symbol: - | Gene ID: 828303 |
Pocket Descriptors | |
Volume: 453.184 | Depth: 17.5134 |
Hydrophobicity: 0.737288 | Drug Score: 0.281777 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: N-TRIMETHYLLYSINE | ||
HET ID: M3L | PubChem: 440121, 6992003 | |
DrugBank: DB03977 | ChEMBL: CHEMBL1234168 | |
Canonical SMILES: OC(=O)[C@H](CCCC[N+](C)(C)C)N | ||
Standard InChI: InChI=1S/C9H20N2O2/c1-11(2,3)7-5-4-6-8(10)9(12)13/h8H,4-7,10H2,1-3H3/p+1/t8-/m0/s1 | ||
Molecular Formula: C9H21N2O2+ | Mol. Weight: 189.27524 | Heavy Atoms: 13 |
Charge: 1 | Is Chiral: True | logP: 0.9751 |
HBD: 2 | HBA: 3 | TPSA: 63.32 |
#Bonds: 13 | #Rotatable Bonds: 6 | Shape Complexity: 0.8888889 |
Stereocomplexity: 0.11111111 | Ligand Type: H3K27me3 |
Binding Affinity |
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- |