PDB Entry (3n9p)

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Visualizer: MichelaNGLo
PDB ID: 3n9p Resolution: 2.39 Å Exp. Method: X-RAY DIFFRACTION
PMID: 20567261 DOI: 10.1038/cr.2010.86
Protein
Protein Name: Lysine-specific demethylase 7 homolog
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q9GYI0 (KDM7_CAEEL) Organism: Caenorhabditis elegans
Gene Symbol: - Gene ID: 177232
Pocket Descriptors
Volume: None Depth: None
Hydrophobicity: None Drug Score: None
Pocket Similarity: Calculate
Ligand
Ligand Name:   N-TRIMETHYLLYSINE
HET ID:   M3L PubChem:   440121, 6992003
DrugBank:   DB03977 ChEMBL:   CHEMBL1234168
Canonical SMILES:   OC(=O)[C@H](CCCC[N+](C)(C)C)N
Standard InChI:   InChI=1S/C9H20N2O2/c1-11(2,3)7-5-4-6-8(10)9(12)13/h8H,4-7,10H2,1-3H3/p+1/t8-/m0/s1
Molecular Formula:   C9H21N2O2+ Mol. Weight:   189.27524 Heavy Atoms:   13
Charge:   1 Is Chiral:   True logP:   0.9751
HBD:   2 HBA:   3 TPSA:   63.32
#Bonds:   13 #Rotatable Bonds:   6 Shape Complexity:   0.8888889
Stereocomplexity:   0.11111111 Ligand Type:   H3K4me3K27me2
Binding Affinity
-