|
PDB Entry (3kqi) Download |
||
|
Visualizer: MichelaNGLo |
||
| PDB ID: 3kqi | Resolution: 1.78 Å | Exp. Method: X-RAY DIFFRACTION |
| PMID: 20129925 | DOI: 10.1074/jbc.C109.097667 | |
Protein |
|
| Protein Name: PHD finger protein 2 | |
| Protein Class: TRANSCRIPTION REGULATOR | |
| Uniprot ID/ACC: O75151 (PHF2_HUMAN) | Organism: Homo sapiens |
| Gene Symbol: PHF2 | Gene ID: 5253 |
Pocket Descriptors | |
| Volume: 272.256 | Depth: 16.0947 |
| Hydrophobicity: 0.729167 | Drug Score: 0.0668229 |
| Pocket Similarity: Calculate | |
Ligand |
||
| | ||
| Ligand Name: N-TRIMETHYLLYSINE | ||
| HET ID: M3L | PubChem: 440121, 6992003 | |
| DrugBank: DB03977 | ChEMBL: CHEMBL1234168 | |
| Canonical SMILES: OC(=O)[C@H](CCCC[N+](C)(C)C)N | ||
| Standard InChI: InChI=1S/C9H20N2O2/c1-11(2,3)7-5-4-6-8(10)9(12)13/h8H,4-7,10H2,1-3H3/p+1/t8-/m0/s1 | ||
| Molecular Formula: C9H21N2O2+ | Mol. Weight: 189.27524 | Heavy Atoms: 13 |
| Charge: 1 | Is Chiral: True | logP: 0.9751 |
| HBD: 2 | HBA: 3 | TPSA: 63.32 |
| #Bonds: 13 | #Rotatable Bonds: 6 | Shape Complexity: 0.8888889 |
| Stereocomplexity: 0.11111111 | Ligand Type: H3K4Me3 | |
Binding Affinity |
||
- |