PDB Entry (1w7g)

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Visualizer: MichelaNGLo

PDB ID: 1w7g Resolution: 1.65 Å Exp. Method: X-RAY DIFFRACTION
PMID: 16294249 DOI: 10.1039/b510239a
Protein
Protein Name: Prothrombin
Protein Class: HYDROLASE
Uniprot ID/ACC: P00734 (THRB_HUMAN) Organism: Homo sapiens
Gene Symbol: F2 Gene ID: 2147
Pocket Descriptors
Volume: 884.288 Depth: 26.4151
Hydrophobicity: 0.682609 Drug Score: 0.58245
Pocket Similarity: Calculate
Ligand
Ligand Name:   N-{(1S)-1-{[4-(3-AMINOPROPYL)PIPERAZIN-1-YL]CARBONYL}-4-[(DIAMINOMETHYLENE)AMINO]BUTYL}-3-(TRIFLUOROMETHYL)BENZENESULFONAMIDE
HET ID:   MIU PubChem:   6852123
DrugBank:   - ChEMBL:   CHEMBL387841
Canonical SMILES:   NCCCN1CCN(CC1)C(=O)[C@@H](NS(=O)(=O)c1cccc(c1)C(F)(F)F)CCCN=C(N)N
Standard InChI:   InChI=1S/C20H32F3N7O3S/c21-20(22,23)15-4-1-5-16(14-15)34(32,33)28-17(6-2-8-27-19(25)26)18(31)30-12-10-29(11-13-30)9-3-7-24/h1,4-5,14,17,28H,2-3,6-13,24H2,(H4,25,26,27)/t17-/m0/s1
Molecular Formula:   C20H32F3N7O3S Mol. Weight:   507.5734 Heavy Atoms:   34
Charge:   0 Is Chiral:   True logP:   3.3473
HBD:   4 HBA:   10 TPSA:   168.52
#Bonds:   36 #Rotatable Bonds:   13 Shape Complexity:   0.6
Stereocomplexity:   0.05 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Ki : 8000 nM
BindingDB Ki : 1900 nM
Binding MOAD Ki : 13000 nM