PDB Entry (4lxb) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 4lxb | Resolution: 1.61 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 24175584 | DOI: 10.1021/jm4005835 | |
Protein |
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Protein Name: Prothrombin | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: P00734 (THRB_HUMAN) | Organism: Homo sapiens |
Gene Symbol: F2 | Gene ID: 2147 |
Pocket Descriptors | |
Volume: 1106.56 | Depth: 31.2026 |
Hydrophobicity: 0.652015 | Drug Score: 0.505984 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 5-Chloro-thiophene-2-carboxylic acid [(S)-2-[2-difluoromethoxy-3-(2-oxo-piperidin-1-yl)-benzenesulfonylamino]-3-((S)-3-dimethylamino-pyrrolidin-1-yl)-3-oxo-propyl]-amide | ||
HET ID: 7R9 | PubChem: 72206621 | |
DrugBank: - | ChEMBL: CHEMBL3091501 | |
Canonical SMILES: FC(Oc1c(cccc1S(=O)(=O)N[C@H](C(=O)N1CC[C@@H](C1)N(C)C)CNC(=O)c1ccc(s1)Cl)N1CCCCC1=O)F | ||
Standard InChI: InChI=1S/C26H32ClF2N5O6S2/c1-32(2)16-11-13-33(15-16)25(37)17(14-30-24(36)19-9-10-21(27)41-19)31-42(38,39)20-7-5-6-18(23(20)40-26(28)29)34-12-4-3-8-22(34)35/h5-7,9-10,16-17,26,31H,3-4,8,11-15H2,1-2H3,(H,30,36)/t16-,17-/m0/s1 | ||
Molecular Formula: C26H32ClF2N5O6S2 | Mol. Weight: 648.14197 | Heavy Atoms: 42 |
Charge: 0 | Is Chiral: True | logP: 4.6247 |
HBD: 2 | HBA: 12 | TPSA: 164.98 |
#Bonds: 47 | #Rotatable Bonds: 13 | Shape Complexity: 0.5 |
Stereocomplexity: 0.07692308 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
Binding MOAD | IC50 : 7 nM |