PDB Entry (4lxb)

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PDB ID: 4lxb Resolution: 1.61 Å Exp. Method: X-RAY DIFFRACTION
PMID: 24175584 DOI: 10.1021/jm4005835
Protein
Protein Name: Prothrombin
Protein Class: HYDROLASE
Uniprot ID/ACC: P00734 (THRB_HUMAN) Organism: Homo sapiens
Gene Symbol: F2 Gene ID: 2147
Pocket Descriptors
Volume: 1106.56 Depth: 31.2026
Hydrophobicity: 0.652015 Drug Score: 0.505984
Pocket Similarity: Calculate
Ligand
Ligand Name:   5-Chloro-thiophene-2-carboxylic acid [(S)-2-[2-difluoromethoxy-3-(2-oxo-piperidin-1-yl)-benzenesulfonylamino]-3-((S)-3-dimethylamino-pyrrolidin-1-yl)-3-oxo-propyl]-amide
HET ID:   7R9 PubChem:   72206621
DrugBank:   - ChEMBL:   CHEMBL3091501
Canonical SMILES:   FC(Oc1c(cccc1S(=O)(=O)N[C@H](C(=O)N1CC[C@@H](C1)N(C)C)CNC(=O)c1ccc(s1)Cl)N1CCCCC1=O)F
Standard InChI:   InChI=1S/C26H32ClF2N5O6S2/c1-32(2)16-11-13-33(15-16)25(37)17(14-30-24(36)19-9-10-21(27)41-19)31-42(38,39)20-7-5-6-18(23(20)40-26(28)29)34-12-4-3-8-22(34)35/h5-7,9-10,16-17,26,31H,3-4,8,11-15H2,1-2H3,(H,30,36)/t16-,17-/m0/s1
Molecular Formula:   C26H32ClF2N5O6S2 Mol. Weight:   648.14197 Heavy Atoms:   42
Charge:   0 Is Chiral:   True logP:   4.6247
HBD:   2 HBA:   12 TPSA:   164.98
#Bonds:   47 #Rotatable Bonds:   13 Shape Complexity:   0.5
Stereocomplexity:   0.07692308 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD IC50 : 7 nM