PDB Entry (4y7b)

Download

Visualizer: MichelaNGLo

PDB ID: 4y7b Resolution: 1.79 Å Exp. Method: X-RAY DIFFRACTION
PMID: - DOI: None
Protein
Protein Name: Coagulation factor X
Protein Class: HYDROLASE
Uniprot ID/ACC: P00742 (FA10_HUMAN) Organism: Homo sapiens
Gene Symbol: F10 Gene ID: 2159
Pocket Descriptors
Volume: 557.824 Depth: 18.6505
Hydrophobicity: 0.652174 Drug Score: 0.235498
Pocket Similarity: Calculate
Ligand
Ligand Name:   6-chloro-N-{(3S)-1-[(2S)-1-{(1R,5S)-7-[2-(methylamino)ethyl]-3,7-diazabicyclo[3.3.1]non-3-yl}-1-oxopropan-2-yl]-2-oxopyrrolidin-3-yl}naphthalene-2-sulfonamide
HET ID:   44I PubChem:   69329219
DrugBank:   - ChEMBL:   -
Canonical SMILES:   CNCCN1C[C@@H]2C[C@H](C1)CN(C2)C(=O)[C@@H](N1CC[C@@H](C1=O)NS(=O)(=O)c1ccc2c(c1)ccc(c2)Cl)C
Standard InChI:   InChI=1S/C27H36ClN5O4S/c1-18(26(34)32-16-19-11-20(17-32)15-31(14-19)10-8-29-2)33-9-7-25(27(33)35)30-38(36,37)24-6-4-21-12-23(28)5-3-22(21)13-24/h3-6,12-13,18-20,25,29-30H,7-11,14-17H2,1-2H3/t18-,19-,20+,25-/m0/s1
Molecular Formula:   C27H36ClN5O4S Mol. Weight:   562.12384 Heavy Atoms:   38
Charge:   0 Is Chiral:   True logP:   3.4369
HBD:   2 HBA:   9 TPSA:   110.44
#Bonds:   46 #Rotatable Bonds:   9 Shape Complexity:   0.5555556
Stereocomplexity:   0.14814815 Ligand Type:   Small Molecule
Binding Affinity
-