PDB Entry (1fax)

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Visualizer: MichelaNGLo

PDB ID: 1fax Resolution: 3.0 Å Exp. Method: X-RAY DIFFRACTION
PMID: 8939944 DOI: None
Protein
Protein Name: Coagulation factor X
Protein Class: HYDROLASE
Uniprot ID/ACC: P00742 (FA10_HUMAN) Organism: Homo sapiens
Gene Symbol: F10 Gene ID: 2159
Pocket Descriptors
Volume: 472.512 Depth: 19.5387
Hydrophobicity: 0.647799 Drug Score: 0.239438
Pocket Similarity: Calculate
Ligand
Ligand Name:   (2S)-3-(7-carbamimidoylnaphthalen-2-yl)-2-[4-({(3R)-1-[(1Z)-ethanimidoyl]pyrrolidin-3-yl}oxy)phenyl]propanoic acid
HET ID:   DX9 PubChem:   122129
DrugBank:   - ChEMBL:   CHEMBL1232407
Canonical SMILES:   CC(=N)N1CC[C@@H](C1)Oc1ccc(cc1)[C@@H](C(=O)O)Cc1ccc2c(c1)cc(cc2)C(=N)N
Standard InChI:   InChI=1S/C26H28N4O3/c1-16(27)30-11-10-23(15-30)33-22-8-6-19(7-9-22)24(26(31)32)13-17-2-3-18-4-5-20(25(28)29)14-21(18)12-17/h2-9,12,14,23-24,27H,10-11,13,15H2,1H3,(H3,28,29)(H,31,32)/t23-,24-/m0/s1
Molecular Formula:   C26H28N4O3 Mol. Weight:   444.5255 Heavy Atoms:   33
Charge:   0 Is Chiral:   True logP:   4.8227
HBD:   4 HBA:   7 TPSA:   123.49
#Bonds:   38 #Rotatable Bonds:   8 Shape Complexity:   0.26923078
Stereocomplexity:   0.07692308 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Ki : 41 nM
BindingDB Ki : 41 nM, Ki : 40 nM, Ki : 22 nM, Ki : 20 nM, Ki : 40 nM, IC50 : 70 nM, IC50 : 130 nM