PDB Entry (1lpg)

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Visualizer: MichelaNGLo

PDB ID: 1lpg Resolution: 2.0 Å Exp. Method: X-RAY DIFFRACTION
PMID: 12061878 DOI: 10.1021/jm0111346
Protein
Protein Name: Coagulation factor X
Protein Class: HYDROLASE
Uniprot ID/ACC: P00742 (FA10_HUMAN) Organism: Homo sapiens
Gene Symbol: F10 Gene ID: 2159
Pocket Descriptors
Volume: 496.896 Depth: 20.7808
Hydrophobicity: 0.664671 Drug Score: 0.19832
Pocket Similarity: Calculate
Ligand
Ligand Name:   [4-({[5-BENZYLOXY-1-(3-CARBAMIMIDOYL-BENZYL)-1H-INDOLE-2-CARBONYL]-AMINO}-METHYL)-PHENYL]-TRIMETHYL-AMMONIUM
HET ID:   IMA PubChem:   446978
DrugBank:   DB02269 ChEMBL:   CHEMBL1190476
Canonical SMILES:   O=C(c1cc2c(n1Cc1cccc(c1)C(=N)N)ccc(c2)OCc1ccccc1)NCc1ccc(cc1)[N+](C)(C)C
Standard InChI:   InChI=1S/C34H35N5O2/c1-39(2,3)29-14-12-24(13-15-29)21-37-34(40)32-20-28-19-30(41-23-25-8-5-4-6-9-25)16-17-31(28)38(32)22-26-10-7-11-27(18-26)33(35)36/h4-20H,21-23H2,1-3H3,(H3-,35,36,37,40)/p+1
Molecular Formula:   C34H36N5O2+ Mol. Weight:   546.68195 Heavy Atoms:   41
Charge:   1 Is Chiral:   False logP:   6.8703
HBD:   3 HBA:   6 TPSA:   93.13
#Bonds:   45 #Rotatable Bonds:   11 Shape Complexity:   0.1764706
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Ki : 82 nM
BindingDB Ki : 82 nM
Binding MOAD Ki : 82 nM