PDB Entry (2wyj)

Download

Visualizer: MichelaNGLo

PDB ID: 2wyj Resolution: 2.38 Å Exp. Method: X-RAY DIFFRACTION
PMID: 20006499 DOI: 10.1016/j.bmcl.2009.11.077
Protein
Protein Name: Coagulation factor X
Protein Class: HYDROLASE
Uniprot ID/ACC: P00742 (FA10_HUMAN) Organism: Homo sapiens
Gene Symbol: F10 Gene ID: 2159
Pocket Descriptors
Volume: 571.456 Depth: 18.8213
Hydrophobicity: 0.672316 Drug Score: 0.266679
Pocket Similarity: Calculate
Ligand
Ligand Name:   (E)-2-(5-CHLOROTHIOPHEN-2-YL)-N-[(3S)-1-{4-[(1S)-1-(DIMETHYLAMINO)ETHYL]-2-FLUOROPHENYL}-2-OXOPYRROLIDIN-3-YL]ETHENESULFONAMIDE
HET ID:   898 PubChem:   11454249
DrugBank:   - ChEMBL:   CHEMBL595477
Canonical SMILES:   CN([C@H](c1ccc(c(c1)F)N1CC[C@@H](C1=O)NS(=O)(=O)/C=C/c1ccc(s1)Cl)C)C
Standard InChI:   InChI=1S/C20H23ClFN3O3S2/c1-13(24(2)3)14-4-6-18(16(22)12-14)25-10-8-17(20(25)26)23-30(27,28)11-9-15-5-7-19(21)29-15/h4-7,9,11-13,17,23H,8,10H2,1-3H3/b11-9+/t13-,17-/m0/s1
Molecular Formula:   C20H23ClFN3O3S2 Mol. Weight:   471.99634 Heavy Atoms:   30
Charge:   0 Is Chiral:   True logP:   5.3955
HBD:   1 HBA:   7 TPSA:   106.34
#Bonds:   34 #Rotatable Bonds:   7 Shape Complexity:   0.35
Stereocomplexity:   0.1 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Ki : 1 nM
BindingDB Ki : 1 nM, Ki : 0.800000011920929 nM
Binding MOAD Ki : 1 nM