PDB Entry (2y5h) Download |
||
Visualizer: MichelaNGLo |
||
PDB ID: 2y5h | Resolution: 1.33 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 22162109 | DOI: 10.1002/chem.201102571 | |
Protein |
|
Protein Name: Coagulation factor X | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: P00742 (FA10_HUMAN) | Organism: Homo sapiens |
Gene Symbol: F10 | Gene ID: 2159 |
Pocket Descriptors | |
Volume: 684.544 | Depth: 20.3961 |
Hydrophobicity: 0.666667 | Drug Score: 0.345142 |
Pocket Similarity: Calculate |
Ligand |
||
Ligand Name: 3-[(3AS,4R,5S,8AS,8BR)-4-[2-(5-CHLOROTHIOPHEN-2-YL)-1,3-OXAZOL-4-YL]-1,3-DIOXO-4,6,7,8,8A,8B-HEXAHYDRO-3AH-PYRROLO[3,4-A]PYRROLIZIN-2-YL]PROPYL-TRIMETHYL-AZANIUM | ||
HET ID: Y5H | PubChem: 54751670 | |
DrugBank: - | ChEMBL: CHEMBL4294106 | |
Canonical SMILES: O=C1N(CCC[N+](C)(C)C)C(=O)[C@@H]2[C@H]1[C@H](c1coc(n1)c1ccc(s1)Cl)N1[C@H]2CCC1 | ||
Standard InChI: InChI=1S/C22H28ClN4O3S/c1-27(2,3)11-5-10-26-21(28)17-14-6-4-9-25(14)19(18(17)22(26)29)13-12-30-20(24-13)15-7-8-16(23)31-15/h7-8,12,14,17-19H,4-6,9-11H2,1-3H3/q+1/t14-,17-,18-,19-/m0/s1 | ||
Molecular Formula: C22H28ClN4O3S+ | Mol. Weight: 464.00073 | Heavy Atoms: 31 |
Charge: 1 | Is Chiral: True | logP: 3.1489 |
HBD: 0 | HBA: 7 | TPSA: 94.89 |
#Bonds: 39 | #Rotatable Bonds: 6 | Shape Complexity: 0.59090906 |
Stereocomplexity: 0.22727273 | Ligand Type: Small Molecule |
Binding Affinity |
|
Database Name | Value |
PDBBind | Ki : 1620 nM |
Binding MOAD | Ki : 1620 nM |