PDB Entry (2y5f) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 2y5f | Resolution: 1.29 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 22162109 | DOI: 10.1002/chem.201102571 | |
Protein |
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Protein Name: Coagulation factor X | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: P00742 (FA10_HUMAN) | Organism: Homo sapiens |
Gene Symbol: F10 | Gene ID: 2159 |
Pocket Descriptors | |
Volume: 795.136 | Depth: 20.028 |
Hydrophobicity: 0.666667 | Drug Score: 0.398283 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: (3AS,4R,5S,8AS,8BR)-4-[5-(5-CHLOROTHIOPHEN-2-YL)-1,2-OXAZOL-3-YL]-2-[3-[1-(2-HYDROXYETHYL)PYRROLIDIN-1-IUM-1-YL]PROPYL]-4,6,7,8,8A,8B-HEXAHYDRO-3AH-PYRROLO[3,4-A]PYRROLIZINE-1,3-DIONE | ||
HET ID: XWG | PubChem: 54751668 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: OCC[N+]1(CCCN2C(=O)[C@H]3[C@@H](C2=O)[C@H]2N([C@H]3c3noc(c3)c3ccc(s3)Cl)CCC2)CCCC1 | ||
Standard InChI: InChI=1S/C25H32ClN4O4S/c26-20-7-6-19(35-20)18-15-16(27-34-18)23-22-21(17-5-3-8-28(17)23)24(32)29(25(22)33)9-4-12-30(13-14-31)10-1-2-11-30/h6-7,15,17,21-23,31H,1-5,8-14H2/q+1/t17-,21-,22-,23-/m0/s1 | ||
Molecular Formula: C25H32ClN4O4S+ | Mol. Weight: 520.06396 | Heavy Atoms: 35 |
Charge: 1 | Is Chiral: True | logP: 3.0044 |
HBD: 1 | HBA: 8 | TPSA: 115.12 |
#Bonds: 44 | #Rotatable Bonds: 8 | Shape Complexity: 0.64 |
Stereocomplexity: 0.2 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
PDBBind | Ki : 2 nM |
Binding MOAD | Ki : 2 nM |