PDB Entry (2y5f)

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PDB ID: 2y5f Resolution: 1.29 Å Exp. Method: X-RAY DIFFRACTION
PMID: 22162109 DOI: 10.1002/chem.201102571
Protein
Protein Name: Coagulation factor X
Protein Class: HYDROLASE
Uniprot ID/ACC: P00742 (FA10_HUMAN) Organism: Homo sapiens
Gene Symbol: F10 Gene ID: 2159
Pocket Descriptors
Volume: 795.136 Depth: 20.028
Hydrophobicity: 0.666667 Drug Score: 0.398283
Pocket Similarity: Calculate
Ligand
Ligand Name:   (3AS,4R,5S,8AS,8BR)-4-[5-(5-CHLOROTHIOPHEN-2-YL)-1,2-OXAZOL-3-YL]-2-[3-[1-(2-HYDROXYETHYL)PYRROLIDIN-1-IUM-1-YL]PROPYL]-4,6,7,8,8A,8B-HEXAHYDRO-3AH-PYRROLO[3,4-A]PYRROLIZINE-1,3-DIONE
HET ID:   XWG PubChem:   54751668
DrugBank:   - ChEMBL:   -
Canonical SMILES:   OCC[N+]1(CCCN2C(=O)[C@H]3[C@@H](C2=O)[C@H]2N([C@H]3c3noc(c3)c3ccc(s3)Cl)CCC2)CCCC1
Standard InChI:   InChI=1S/C25H32ClN4O4S/c26-20-7-6-19(35-20)18-15-16(27-34-18)23-22-21(17-5-3-8-28(17)23)24(32)29(25(22)33)9-4-12-30(13-14-31)10-1-2-11-30/h6-7,15,17,21-23,31H,1-5,8-14H2/q+1/t17-,21-,22-,23-/m0/s1
Molecular Formula:   C25H32ClN4O4S+ Mol. Weight:   520.06396 Heavy Atoms:   35
Charge:   1 Is Chiral:   True logP:   3.0044
HBD:   1 HBA:   8 TPSA:   115.12
#Bonds:   44 #Rotatable Bonds:   8 Shape Complexity:   0.64
Stereocomplexity:   0.2 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Ki : 2 nM
Binding MOAD Ki : 2 nM