PDB Entry (2bok)

Download

Visualizer: MichelaNGLo

PDB ID: 2bok Resolution: 1.64 Å Exp. Method: X-RAY DIFFRACTION
PMID: 15952226 DOI: 10.1002/anie.200500883
Protein
Protein Name: Coagulation factor X
Protein Class: HYDROLASE
Uniprot ID/ACC: P00742 (FA10_HUMAN) Organism: Homo sapiens
Gene Symbol: F10 Gene ID: 2159
Pocket Descriptors
Volume: 734.976 Depth: 19.8796
Hydrophobicity: 0.661538 Drug Score: 0.468958
Pocket Similarity: Calculate
Ligand
Ligand Name:   [AMINO (4-{(3AS,4R,8AS,8BR)-1,3-DIOXO-2- [3-(TRIMETHYLAMMONIO) PROPYL]DECAHYDROPYRROLO[3,4-A] PYRROLIZIN-4-YL}PHENYL) METHYLENE]AMMONIUM
HET ID:   784 PubChem:   4369605
DrugBank:   - ChEMBL:   CHEMBL1230553
Canonical SMILES:   O=C1N(CCC[N+](C)(C)C)C(=O)[C@@H]2[C@H]1[C@H](c1ccc(cc1)C(=N)N)N1[C@H]2CCC1
Standard InChI:   InChI=1S/C22H32N5O2/c1-27(2,3)13-5-12-26-21(28)17-16-6-4-11-25(16)19(18(17)22(26)29)14-7-9-15(10-8-14)20(23)24/h7-10,16-19H,4-6,11-13H2,1-3H3,(H3,23,24)/q+1/t16-,17-,18-,19-/m0/s1
Molecular Formula:   C22H32N5O2+ Mol. Weight:   398.5218 Heavy Atoms:   29
Charge:   1 Is Chiral:   True logP:   1.8631
HBD:   2 HBA:   6 TPSA:   90.49
#Bonds:   36 #Rotatable Bonds:   6 Shape Complexity:   0.59090906
Stereocomplexity:   0.22727273 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Ki : 280 nM
Binding MOAD Ki : 280 nM