PDB Entry (5mat)

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Visualizer: MichelaNGLo

PDB ID: 5mat Resolution: 2.07 Å Exp. Method: X-RAY DIFFRACTION
PMID: 28135086 DOI: 10.1021/acs.jmedchem.6b01690
Protein
Protein Name: NAD-dependent protein deacetylase sirtuin-2
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q8IXJ6 (SIR2_HUMAN) Organism: Homo sapiens
Gene Symbol: SIRT2 Gene ID: 22933
Pocket Descriptors
Volume: 1987.46 Depth: 61.4602
Hydrophobicity: 0.707792 Drug Score: 1.0
Pocket Similarity: Calculate
Ligand
Ligand Name:   (7~{R})-7-[(3,5-dimethyl-1,2-oxazol-4-yl)methylamino]-3-[(4-methoxynaphthalen-1-yl)methyl]-5,6,7,8-tetrahydro-[1]benzothiolo[2,3-d]pyrimidin-4-one
HET ID:   7KJ PubChem:   124081192
DrugBank:   - ChEMBL:   -
Canonical SMILES:   COc1ccc(c2c1cccc2)Cn1cnc2c(c1=O)c1CC[C@H](Cc1s2)NCc1c(C)noc1C
Standard InChI:   InChI=1S/C28H28N4O3S/c1-16-23(17(2)35-31-16)13-29-19-9-10-22-25(12-19)36-27-26(22)28(33)32(15-30-27)14-18-8-11-24(34-3)21-7-5-4-6-20(18)21/h4-8,11,15,19,29H,9-10,12-14H2,1-3H3/t19-/m1/s1
Molecular Formula:   C28H28N4O3S Mol. Weight:   500.6119 Heavy Atoms:   36
Charge:   0 Is Chiral:   True logP:   5.3109
HBD:   1 HBA:   8 TPSA:   110.42
#Bonds:   42 #Rotatable Bonds:   6 Shape Complexity:   0.32142857
Stereocomplexity:   0.035714287 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD IC50 : 580 nM