PDB Entry (5mat) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 5mat | Resolution: 2.07 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 28135086 | DOI: 10.1021/acs.jmedchem.6b01690 | |
Protein |
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Protein Name: NAD-dependent protein deacetylase sirtuin-2 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: Q8IXJ6 (SIR2_HUMAN) | Organism: Homo sapiens |
Gene Symbol: SIRT2 | Gene ID: 22933 |
Pocket Descriptors | |
Volume: 1987.46 | Depth: 61.4602 |
Hydrophobicity: 0.707792 | Drug Score: 1.0 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: (7~{R})-7-[(3,5-dimethyl-1,2-oxazol-4-yl)methylamino]-3-[(4-methoxynaphthalen-1-yl)methyl]-5,6,7,8-tetrahydro-[1]benzothiolo[2,3-d]pyrimidin-4-one | ||
HET ID: 7KJ | PubChem: 124081192 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: COc1ccc(c2c1cccc2)Cn1cnc2c(c1=O)c1CC[C@H](Cc1s2)NCc1c(C)noc1C | ||
Standard InChI: InChI=1S/C28H28N4O3S/c1-16-23(17(2)35-31-16)13-29-19-9-10-22-25(12-19)36-27-26(22)28(33)32(15-30-27)14-18-8-11-24(34-3)21-7-5-4-6-20(18)21/h4-8,11,15,19,29H,9-10,12-14H2,1-3H3/t19-/m1/s1 | ||
Molecular Formula: C28H28N4O3S | Mol. Weight: 500.6119 | Heavy Atoms: 36 |
Charge: 0 | Is Chiral: True | logP: 5.3109 |
HBD: 1 | HBA: 8 | TPSA: 110.42 |
#Bonds: 42 | #Rotatable Bonds: 6 | Shape Complexity: 0.32142857 |
Stereocomplexity: 0.035714287 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
Binding MOAD | IC50 : 580 nM |