PDB Entry (5emj) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 5emj | Resolution: 2.27 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 26985292 | DOI: 10.1021/acsmedchemlett.5b00380 | |
Protein |
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Protein Name: Protein arginine N-methyltransferase 5 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: O14744 (ANM5_HUMAN) | Organism: Homo sapiens |
Gene Symbol: PRMT5 | Gene ID: 10419 |
Pocket Descriptors | |
Volume: 541.376 | Depth: 25.2895 |
Hydrophobicity: 0.72332 | Drug Score: 0.144035 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: (2~{S})-1-(3,4-dihydro-1~{H}-isoquinolin-2-yl)-3-[[4-(3-methylbenzimidazol-5-yl)pyridin-2-yl]amino]propan-2-ol | ||
HET ID: 5QJ | PubChem: 90335209 | |
DrugBank: - | ChEMBL: CHEMBL3891092 | |
Canonical SMILES: O[C@H](CN1CCc2c(C1)cccc2)CNc1nccc(c1)c1ccc2c(c1)n(C)cn2 | ||
Standard InChI: InChI=1S/C25H27N5O/c1-29-17-28-23-7-6-19(12-24(23)29)20-8-10-26-25(13-20)27-14-22(31)16-30-11-9-18-4-2-3-5-21(18)15-30/h2-8,10,12-13,17,22,31H,9,11,14-16H2,1H3,(H,26,27)/t22-/m0/s1 | ||
Molecular Formula: C25H27N5O | Mol. Weight: 413.51477 | Heavy Atoms: 31 |
Charge: 0 | Is Chiral: True | logP: 3.4773 |
HBD: 2 | HBA: 6 | TPSA: 66.21 |
#Bonds: 36 | #Rotatable Bonds: 6 | Shape Complexity: 0.28 |
Stereocomplexity: 0.04 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
Binding MOAD | IC50 : 33 nM |