PDB Entry (5emj)

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Visualizer: MichelaNGLo

PDB ID: 5emj Resolution: 2.27 Å Exp. Method: X-RAY DIFFRACTION
PMID: 26985292 DOI: 10.1021/acsmedchemlett.5b00380
Protein
Protein Name: Protein arginine N-methyltransferase 5
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: O14744 (ANM5_HUMAN) Organism: Homo sapiens
Gene Symbol: PRMT5 Gene ID: 10419
Pocket Descriptors
Volume: 541.376 Depth: 25.2895
Hydrophobicity: 0.72332 Drug Score: 0.144035
Pocket Similarity: Calculate
Ligand
Ligand Name:   (2~{S})-1-(3,4-dihydro-1~{H}-isoquinolin-2-yl)-3-[[4-(3-methylbenzimidazol-5-yl)pyridin-2-yl]amino]propan-2-ol
HET ID:   5QJ PubChem:   90335209
DrugBank:   - ChEMBL:   CHEMBL3891092
Canonical SMILES:   O[C@H](CN1CCc2c(C1)cccc2)CNc1nccc(c1)c1ccc2c(c1)n(C)cn2
Standard InChI:   InChI=1S/C25H27N5O/c1-29-17-28-23-7-6-19(12-24(23)29)20-8-10-26-25(13-20)27-14-22(31)16-30-11-9-18-4-2-3-5-21(18)15-30/h2-8,10,12-13,17,22,31H,9,11,14-16H2,1H3,(H,26,27)/t22-/m0/s1
Molecular Formula:   C25H27N5O Mol. Weight:   413.51477 Heavy Atoms:   31
Charge:   0 Is Chiral:   True logP:   3.4773
HBD:   2 HBA:   6 TPSA:   66.21
#Bonds:   36 #Rotatable Bonds:   6 Shape Complexity:   0.28
Stereocomplexity:   0.04 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
Binding MOAD IC50 : 33 nM