PDB Entry (4x60)

Download

Visualizer: MichelaNGLo

PDB ID: 4x60 Resolution: 2.35 Å Exp. Method: X-RAY DIFFRACTION
PMID: 25915199 DOI: 10.1038/nchembio.1810
Protein
Protein Name: Protein arginine N-methyltransferase 5
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: O14744 (ANM5_HUMAN) Organism: Homo sapiens
Gene Symbol: PRMT5 Gene ID: 10419
Pocket Descriptors
Volume: 570.688 Depth: 22.1393
Hydrophobicity: 0.72695 Drug Score: 0.207822
Pocket Similarity: Calculate
Ligand
Ligand Name:   N-[(2S)-3-(3,4-dihydroisoquinolin-2(1H)-yl)-2-hydroxypropyl]-6-(oxetan-3-ylamino)pyrimidine-4-carboxamide
HET ID:   3XV PubChem:   90241673
DrugBank:   - ChEMBL:   CHEMBL4060831
Canonical SMILES:   O[C@H](CN1CCc2c(C1)cccc2)CNC(=O)c1ncnc(c1)NC1COC1
Standard InChI:   InChI=1S/C20H25N5O3/c26-17(10-25-6-5-14-3-1-2-4-15(14)9-25)8-21-20(27)18-7-19(23-13-22-18)24-16-11-28-12-16/h1-4,7,13,16-17,26H,5-6,8-12H2,(H,21,27)(H,22,23,24)/t17-/m0/s1
Molecular Formula:   C20H25N5O3 Mol. Weight:   383.4442 Heavy Atoms:   28
Charge:   0 Is Chiral:   True logP:   0.8381
HBD:   3 HBA:   8 TPSA:   99.61
#Bonds:   32 #Rotatable Bonds:   8 Shape Complexity:   0.45
Stereocomplexity:   0.05 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
BindingDB IC50 : 100 nM, IC50 : 22 nM
Binding MOAD Kd : 1 nM