PDB Entry (4x60) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 4x60 | Resolution: 2.35 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 25915199 | DOI: 10.1038/nchembio.1810 | |
Protein |
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Protein Name: Protein arginine N-methyltransferase 5 | |
Protein Class: TRANSCRIPTION REGULATOR | |
Uniprot ID/ACC: O14744 (ANM5_HUMAN) | Organism: Homo sapiens |
Gene Symbol: PRMT5 | Gene ID: 10419 |
Pocket Descriptors | |
Volume: 570.688 | Depth: 22.1393 |
Hydrophobicity: 0.72695 | Drug Score: 0.207822 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: N-[(2S)-3-(3,4-dihydroisoquinolin-2(1H)-yl)-2-hydroxypropyl]-6-(oxetan-3-ylamino)pyrimidine-4-carboxamide | ||
HET ID: 3XV | PubChem: 90241673 | |
DrugBank: - | ChEMBL: CHEMBL4060831 | |
Canonical SMILES: O[C@H](CN1CCc2c(C1)cccc2)CNC(=O)c1ncnc(c1)NC1COC1 | ||
Standard InChI: InChI=1S/C20H25N5O3/c26-17(10-25-6-5-14-3-1-2-4-15(14)9-25)8-21-20(27)18-7-19(23-13-22-18)24-16-11-28-12-16/h1-4,7,13,16-17,26H,5-6,8-12H2,(H,21,27)(H,22,23,24)/t17-/m0/s1 | ||
Molecular Formula: C20H25N5O3 | Mol. Weight: 383.4442 | Heavy Atoms: 28 |
Charge: 0 | Is Chiral: True | logP: 0.8381 |
HBD: 3 | HBA: 8 | TPSA: 99.61 |
#Bonds: 32 | #Rotatable Bonds: 8 | Shape Complexity: 0.45 |
Stereocomplexity: 0.05 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
BindingDB | IC50 : 100 nM, IC50 : 22 nM |
Binding MOAD | Kd : 1 nM |