PDB Entry (5ph0)

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Visualizer: MichelaNGLo

PDB ID: 5ph0 Resolution: 1.34 Å Exp. Method: X-RAY DIFFRACTION
PMID: 28436492 DOI: 10.1038/ncomms15123
Protein
Protein Name: Lysine-specific demethylase 4D
Protein Class: TRANSCRIPTION REGULATOR
Uniprot ID/ACC: Q6B0I6 (KDM4D_HUMAN) Organism: Homo sapiens
Gene Symbol: KDM4D Gene ID: 55693
Pocket Descriptors
Volume: 771.648 Depth: 20.2781
Hydrophobicity: 0.684524 Drug Score: 0.598837
Pocket Similarity: Calculate
Ligand
Ligand Name:   N-OXALYLGLYCINE
HET ID:   OGA PubChem:   3080614
DrugBank:   - ChEMBL:   CHEMBL90852
Canonical SMILES:   OC(=O)CNC(=O)C(=O)O
Standard InChI:   InChI=1S/C4H5NO5/c6-2(7)1-5-3(8)4(9)10/h1H2,(H,5,8)(H,6,7)(H,9,10)
Molecular Formula:   C4H5NO5 Mol. Weight:   147.0862 Heavy Atoms:   10
Charge:   0 Is Chiral:   False logP:   -1.3373
HBD:   3 HBA:   6 TPSA:   103.7
#Bonds:   9 #Rotatable Bonds:   4 Shape Complexity:   0.25
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
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